MmuALTD0001857-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000006057 | Atp5g1
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
Coordinates
chr11:96073523-96075033:-
Coord C1 exon
chr11:96074987-96075033
Coord A exon
chr11:96074850-96074986
Coord C2 exon
chr11:96073523-96073701
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCTCCCTCCCTTCCTTCCAGCCT
3' ss Score
10.32
Exon sequences
Seq C1 exon
ATTGAAAAATGCAGACCACCAAGGCACTGCTCATTTCTCCAGCTCTG
Seq A exon
GTAAGCGGAAGCTCCGGGTTTCCCTATAGTGCCGGGTATGGTATGGGAGCAATCATGTTTAATGAATGGACTAAGAGGGGCTGGCGTTCCGTGATGATGATGATGGCTATTGGCGGAGGGTATAGGAGCTGTTGCAG
Seq C2 exon
CCTTCCTGCAGCAGCTCCCCTCTCCAGGTGGCCCGACGGGAATTCCAGACCAGTGTCATTTCCCGGGACATCGACACAGCAGCCAAGTTCATTGGTGCTGGGGCCGCCACAGTTGGTGTGGCTGGATCAGGAGCTGGCATTGGCACAGTGTTTGGTAGCTTGATTATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006057-5-10,7-10,8-10,10-10-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGCAGACCACCAAGGCA
R:
GCATAGCCAATAATCAAGCTACCA
Band lengths:
218-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types