HsaALTD1029949-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000159915 | ZNF233
Description
zinc finger protein 233 [Source:HGNC Symbol;Acc:HGNC:30946]
Coordinates
chr19:44266911-44275309:+
Coord C1 exon
chr19:44266911-44266961
Coord A exon
chr19:44266962-44267144
Coord C2 exon
chr19:44272899-44275309
Length
183 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AGTTCTCTTTATCATTCTAGGAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
AAGACAAGCTTCGGATGATGGAGACAGAAATCCAAGGAGATGGGTGTTCAG
Seq A exon
GTGAGAACCATGGAGCTCTGAGTCTTTGCGGGGTACAGCCTAGTCCTCTCCTCCTCACCACCTCCTCAGCCACCAGCCTGGCCCAAGACCCCAGAATTCATCGCCCTGGTTTACTGCAGCAGCTTGCACATGACCTTCCTCCTTCTACCTCCCTCCAGTCCATTCTCCACATAGCCAGATCAT
Seq C2 exon
GACACAAGAATCAAAATGAGATAGATACCCTTCAAGAAGTAAGATTAAGATTCCTTTCATATGAAGACCTTATATGCTGGCAAATATGGGAACAATTTACAAGTAAATTAACCAGTAATCAAGACCTAATAATAAATCTTCAAGGCAAGAGGTCCAAGTTGCTAAAACAAGGTGATTCCCCCTGTCAGGTGTGGACAGGAGAATCTAGTCAGGTCTCTGAAGATGAGAACTATGTAATAAAGCTACAAGGGGAGAGTTCAAATAGCATAAAAAATCAAGAGCTTCCATTGAGGACCACCTGGGATTTCTGGAGGAAAATGTATCTGAGAGAACCACAGAATTATCAGAGTAGGTGTCAGCAAATTGATGTAAAAAATAAGCTCTGTAAATGTGATCATTGTGTTAGGCAAAGAATTGCTCATCAACATGATGATCATGGAGTACACAAAAGAGAGAAAGCTTTTAGCCACAATAATTGTGGAAAAGACTGTGTGAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159915-7-11,8-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTTCGGATGATGGAGAC
R:
TCTCCTGTCCACACCTGACAG
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains