HsaALTD1029949-1/2 @ hg38

Alternative 5'ss

Gene

ENSG00000159915 | ZNF233

Description

zinc finger protein 233 [Source:HGNC Symbol;Acc:HGNC:30946]

Coordinates

chr19:44266911-44275309:+

Coord C1 exon

chr19:44266911-44266961

Coord A exon

NA

Coord C2 exon

chr19:44272899-44275309

Length

0 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

3' ss Seq

AGTTCTCTTTATCATTCTAGGAC

3' ss Score

9.12

Exon sequences

Seq C1 exon

AAGACAAGCTTCGGATGATGGAGACAGAAATCCAAGGAGATGGGTGTTCAG

Seq A exon

NA

Seq C2 exon

GACACAAGAATCAAAATGAGATAGATACCCTTCAAGAAGTAAGATTAAGATTCCTTTCATATGAAGACCTTATATGCTGGCAAATATGGGAACAATTTACAAGTAAATTAACCAGTAATCAAGACCTAATAATAAATCTTCAAGGCAAGAGGTCCAAGTTGCTAAAACAAGGTGATTCCCCCTGTCAGGTGTGGACAGGAGAATCTAGTCAGGTCTCTGAAGATGAGAACTATGTAATAAAGCTACAAGGGGAGAGTTCAAATAGCATAAAAAATCAAGAGCTTCCATTGAGGACCACCTGGGATTTCTGGAGGAAAATGTATCTGAGAGAACCACAGAATTATCAGAGTAGGTGTCAGCAAATTGATGTAAAAAATAAGCTCTGTAAATGTGATCATTGTGTTAGGCAAAGAATTGCTCATCAACATGATGATCATGGAGTACACAAAAGAGAGAAAGCTTTTAGCCACAATAATTGTGGAAAAGACTGTGTGAAGGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000159915-7-11,8-11-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.109 A=NA C2=0.165

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4)

Main Inclusion Isoform:

ENSP00000375820