BtaALTD0000772-2/2 @ bosTau6

Alternative 5'ss

Gene

ENSBTAG00000040209

Description

NA

Coordinates

chr18:52582739-52589851:-

Coord C1 exon

chr18:52589777-52589851

Coord A exon

chr18:52589765-52589776

Coord C2 exon

chr18:52582739-52585224

Length

12 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

3' ss Seq

AAATCTCTTTATTCTTATAGGAA

3' ss Score

7.35

Exon sequences

Seq C1 exon

GAAATCAGCCCTTCAAACCAGAGCTTATATTCCAGCTGGAGAGAGAAGAGCGTTTGATGATGGAGTCCCAGAGAG

Seq A exon

GTGGGTGTTCAG

Seq C2 exon

GAACCAAGAGTCCACATAATATGGAAAGTATTCAAGAAGTGGGATTAAGCTGCTTTTCCCCCAAAGACCTTTCCACCTGGCAGTCCTGGCAACGAGGTGCAGGCAGGTTAACTGGGTGTCAAGATTCCATGAGAAACTTCCAAGAGAATATTTCTCAGTTGCAAAAACAAGGTGATTCCCCCTGCCAGGTTTGGGCAGGAATACCAATTCAGATTTCTGAAGATGAGAACTGTGTCTTGACTCACATAGGAGACGGTTCCAATGACATAAAAAATCAAGAATTTCCCTCTTGGCGAGCCCACCATTCTTGGAGGAAAATGTACCTTACAGAGTCACGTAATTATCAATGTCGATGTCAGCAAGTTTCCAAGGAAAATGATTTCTGTAAATCTGACAGCATCAGTTGGATCTCACATCATGGTGATAATCTGGGTGTACACAGAACAGGAAAAAACTCCAGCTGCCATGACTGTGGAGAAGATGTCATGAAGGTTTCATTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000040209-4-3,5-3-2/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.300 A=NA C2=0.086

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)

Main Inclusion Isoform:

ENSBTAP00000050759