BtaINT0008304 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:52582739-52589851:-
Coord C1 exon
chr18:52589765-52589851
Coord A exon
chr18:52585225-52589764
Coord C2 exon
chr18:52582739-52585224
Length
4540 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AAATCTCTTTATTCTTATAGGAA
3' ss Score
7.35
Exon sequences
Seq C1 exon
GAAATCAGCCCTTCAAACCAGAGCTTATATTCCAGCTGGAGAGAGAAGAGCGTTTGATGATGGAGTCCCAGAGAGGTGGGTGTTCAG
Seq A exon
GTGAGAACCATCCGGCAGTCACCCAGCAGCCAGAGAGCCCCTCCCAGAACACGAGTCAGAAGGGGTCAGGCCCTGAGGTGTCTGTACCCTCACTGCTCTAGCTTCTCCGATCCTAGCTCATTCCTTCTGTCCCAGCTGCACTGGCCCACTTGCTACCCATCAGACCTGTCTCAGTGATGCTTCTGCTTCGGGTTACTTGGCTTGCTTTGCTGTGTGCCTTGAATGAGTGAGTCAGTTAATACATGCATGGTCTTCCCTGTCTTCAGTCCTCCCTGAGGCAGCCAACAGGTATAGAGTAAACCATGTGATAGAGAGATACTCCAGAGTGGTGTTTGTCGTCAGATGAATGCCTGTCCTAATTCTGTGTAGGTGTCCTTTAGTATTCATGGATAGGTACTCATTATTTCTTAAAGGATAAGAATAGCCAGGCAGCTAAAAGAAATATCAGCAATGATCAGTGCTAAAGGATAATCTGCCCTCCCATGCAGCAATTTCAGGTGAGACACTCTTGCATTAACTTCCTCAGTTAAATGCCCAGTTCTTTATCTTTTTCTGTTCTTATTACTGTCCCATCCTCTAATATGTAACAGTCTCTTGACCTAGCTGCAGTTTTCTTTTCTTATTCAGTTTGTTTAAATTAAAAAAATCAGTTCACCTGTTTTTCCTGTCCCCAAACTGCTGCCTCTTGCAACCACCCATCCGTTTTCTGGTATCTGTGAGCTTGCTTGGTGTGTGTGTGTGTGTTGGGGAGTGTTTTAGATTCCACGTATAATAGAGATCGAGCAGTATTTGTCTTTAAATACCTCCAAGGTCTACCTGCATTGTTGCAAATGGCAAGATTTCATATTTATCTGTGGTTGCATTTTCTTTATCCGTTTATCCATCAGTGGACACTGAGACTGTTCCTTTATCTCGACTGTTGTACATAATTCTGTGGTGTACATGTTGTACAGTGTACATGTGTTGTTGTTTAGTCATGTCTGATTCTTTGCAACCCTATGGGCTGTATCTTTTCAAGTTAGTGTTTTCTTTTTCTTCAGATAAATACCTAGAAGTAGAATTGCTGAATCATATAATTCTATTTTTAATTTTTTGAGGAACCTCTATAACGACTTCCATAGTGGCTGCACCAACTTATATTCCCACCAACAGTGTACAAGCCTTCCCTTTTCTCTACATCCTTGCCAGCGTTTGTCATCTCTTGCCTTAGAGCCTGGTGAGCCACAGTCCATAGGGTCGCAAAGAGTCAGACACAACTGAAGCGAGTGAGCGCACACACACATCTTTTTGATAATAGCCATTCCAACAGATGGGAGTTGATAGCTCATTGTAATTTTGGTTTGCATTTCCCTGGTGATTAATGTTGTTGAGCATCTTTTTATGAACCTGTTGGCCAGCTGTGTGTCTTCTTTGGGAAAATGTCTATTCAGGTCTTCTGCCCACTTTTTTTAAATTGAATAGTTTGTTTTTTGCTATTGAATTGTATGAGTTCTCTATGTAGTTTGGATATTAACCCCTTATCAAATATATGATTTACAAATACTTTCTCCCATTCAGTAAGTTCGCCTTTTCATTTTGTTGTTGGTTTCCTTTGCTGTGCAGAAGCTTCTTGGTTTGATGTAGTCCCACTTGTTTATTTTTGCTTTTGTTGCTTTTGATCATATGATTTTTATCCTTCATTTTGCTAATACTGGGTGTCACATGTAGTGATCTGAAGACGTTGAACCATCCTTGCATTCCTAGAATAAGTCCCATGTGATTGTCTTGTACGATCTTTTAATGTGCTGTTGAATTCAGAATGTTTTGTTGATTTTTGCATCGTGTTCACTGGGCGGTACTGGGCTGTAGTTTTCTTTTTAAAGTAGAACTTCTAAGCTGGACATTTATGTGAGTCCAAACATTTTAGTAATGTTTCTTGAGTCCTCAGATTCTGATGTCAAAAGCCGTGGTCACAGCTGTGGAGCTGGAAATGCTCCTGGGTAGGAATGAGAGTCAACTGAAAATTTCAAAACAAATTACTTCACTTCTATGATTTTTCTGTTGTCATCTCAGTTCAGGTTCAAGGTCATACAGGCAATATATTCTTTAGACAAAGTGTCAGCAAACTTTTTCTCTGAAGGTCCAGATGGTAAATATTTTAGGTTTTGCTGACCATATTTGATCTCTGTCAAAGAGACCAAATGCTTTTTCTTACACCAGTTTAAAAAATGTAAAATCTATTCTTGTTCCTAGGCTATACAAAAACAGAGCTAGGGCTGTAGTGTGCTAGTCCCCCTGCCTGATGGTATCAGTAGGAATGTAATGTCATATTTTGAAGTACCTTTTTATTTAGTATTTCCATATATTAACATGTTTATACCTTATATTCATGCAAAATTTTGAAAATATATATTCTTATTTTTAAAGTACTAATTTTTTTCCTTCACGGTAATAAAGTACTAATTTTTCTCCTTCATGGTACCTTGGGGAAATCCCTCCCAATCTGAGATTATAACTCTTTTTTTAAAAAAATCATTGCTACATAATCCAATATGTGGCTATAACATGCAGCATTTAGCCATATGCTGCACGTTGCATGCAGCATACTGTGTCTTAGTTGCAGCATGGGGGATCTAGTTCCCTCACCAGGGATACCCGGGTCCCCCAGCATTGGGAGTGTGGAGTCGCAGCCACTGGACCACCAGGGAACTCCATTTCACCTTTAGGTGACAGAATGTTAGTATAATAACTGAAAGCCTTGCTTTTGAGAAACCAAAGACATCGCTAAGCATTCTTGTTTTTAAGTACTGAGATGCGTACTCGTGGATGTGCCGTAGGCCCTGCAGCCAACACATTGCCCCAGAGCCTGCTGCCACGCAGTCGTCAGTGTCGCCCTTTATTTTTTTCCTTGTTTTAAAAGTTGGCGATAGGGTGGGGCCAAGAGTTAAGATTTTGTGTGAGAAAAACTACACCATTTCAAAGGTTATTTTCAGAATTAAAAAGACACAGTCCACAAGATTCTTGTGACCTTTGCTTTTCTCACTGGCAAGTGGTAACTGAGTGTAACCCTGCCTCTCATACAGCCTTTCAGCTGTGCAGTAAAATTGCCATCACCAGCTTCTTTCCCATAAAAAGTAACTTACACATGCATGCCCTGTCAGTTCTGTGACTGAGAATGACTCAAGCTGTGATCTATTCATTAAATGCTTACTGAGCAGCTGCTGTTCACTAGGAGTGTTAGAGGCAGTAAGGGTGAGACAGTGCACACAGCAAAGTGCTCTTCCTTGTGTGTAATACACTCCCGTGTTTAGAGACAGGAGAACACCAGTAGCTAAGGAAGAATTATTGCATTTGAAGATAATATTCACATTATGAGAAAAAAATTCCCTTTTACTGCCTTTTCCCCCTCACCTTGGATACTGAAAGAGGATTAATATTTTGCCAAGTATTAGGAGAGTGCGTGTTATTGCTTCAGCCCTGTTGGGCCACTTGTTCTCCGGGAATAAATATACTTCTCACTAGGATGTGAATGATACGCTGCCTGCTGATAACCTGAGCTTTCGTAACTAACAGACAAGCCATTTCCACCCAAACATGCCCATCTTCAACTCTACCAGTGCCTCAGATTCCTTAAACATCAAAGTACTTTATCAGCAAAATGACAGTCATTGTTCATTGAGTTTTACTTGTTAAGTTGCCTCAAAGGACCATGAAACTTGCCTGTGCAATTCTCTTTTGAATTAAATTTATTTATTTTTAATTGAAGGATACTTGCTTTACAGTATTGTGTTGGTTTCTGCCAAATATAAACATAATCAGCCATAGGTATAACTATGTCCCTTCCCTCTTGACCCTCCCTCCCATCTCCCTTCTCATCCCACCCCTCTAGGTTGCTACAGAGCCCTGGTTTGAGTTTCTTGAGTCATAGAGCAAATTCCCATCTTGCCTTTGCAATTCTGCCACAGTGTTTCACATTTCACCTGCCCCATGGCCCTTGCTAATTGCAAAATATCTTTTAAAAGGAGTTTAAACTGGTTATGGCTTACAGTGACATAGGAGAACGCATTATTCTCATGAAAATGAACTCATTAGAGATAGGCCATACAAGACATCAAGAATCGATGAAAGGTCTCTGTTTACCTTCATCTACATAGCATTTAACACACGATTTTGTGTGTGGCAAAATACATTTGTCCACCTGAAACTATATTCTTTCCAGTTTGAGACTACCCGCTTCTGTTTTTTCCTTGGAATCTCCAGGCAGCCCATGACAATGTGTGCATGGTTTAACTAGGCCTTTTGAACAGAGCCACCATCTTTGATGTCCAGGTTGCATTGCATAGCCCTGATTTTGAGGCATATGCATAGCCCGAATTCTGTGAATCCTACTTCTATTCCTGGTGTAGCCAAAGGTAAACGATATTCTAAGTATTGTCAGAGGTAGTAACAAACTTTCCTCCAGTTTATTGAAGTTTCATGTCATGATCTAAGTGCAGAATCTTGAAATCTCTGAATAAAAGCATTCATTGCGCACATGTCTAAAATCTCTTTATTCTTATAG
Seq C2 exon
GAACCAAGAGTCCACATAATATGGAAAGTATTCAAGAAGTGGGATTAAGCTGCTTTTCCCCCAAAGACCTTTCCACCTGGCAGTCCTGGCAACGAGGTGCAGGCAGGTTAACTGGGTGTCAAGATTCCATGAGAAACTTCCAAGAGAATATTTCTCAGTTGCAAAAACAAGGTGATTCCCCCTGCCAGGTTTGGGCAGGAATACCAATTCAGATTTCTGAAGATGAGAACTGTGTCTTGACTCACATAGGAGACGGTTCCAATGACATAAAAAATCAAGAATTTCCCTCTTGGCGAGCCCACCATTCTTGGAGGAAAATGTACCTTACAGAGTCACGTAATTATCAATGTCGATGTCAGCAAGTTTCCAAGGAAAATGATTTCTGTAAATCTGACAGCATCAGTTGGATCTCACATCATGGTGATAATCTGGGTGTACACAGAACAGGAAAAAACTCCAGCTGCCATGACTGTGGAGAAGATGTCATGAAGGTTTCATTGCTTAATCATATTCAAACAGGGCAAAAGCCCTATCCTGGTAATGAGTTCAGAAAAGCCTTCAGCGATGACTCCAGCTCTGAAGTTCATCAGCAATTAGATTTAGAAGGAAAGCCCTGTACATACAGTGCATGTGAAAAGGACTGTAGTTACAGGTCAGTTCTTCATATTCATCAGAGTGTTTGTAGAGGAGATCATTGTATTTTTGAGAATTCACATCTGCAATCGCATCAGAAAGGACACGCAAAAGAGAAGCCATTTAAATGTGAATACAGTGAGAGCATCAATCAGTGCTCCTCTCATAACACATATCAACTTATACCCAGAGGAGAGACGTCTGATAGATACAGCGTGTATGAGAAAGGCTTCAGTCATAGCTTAGACCTTAGTAGTATTGTTAGGGTCTACATCGAGGAGGAATCCCATGAATCTGAGGAGAATGGGAATGCCTTTAATGAGAATTCTTGTCTTCAAGCCCATCAGAAAATCCACACTGAAGAGAAACGATACACAGACATGGAGTGTGAGAAAGGTTTCATTTGTAACTCAGATCTGAACATTCAGCACAGAGTTCACATGGAAGAGGTTCCCTATAATTCTGAGGCATGTGCTAATGGCTTCAGTCTGGCCTCACATTTTCAAAACCTTCAGATAGTCCACACTAGGGAACAACCCTATAAACGTTACACATGTGGTAACAGCTTCAGCCAAAGTTCGTATCTTCAAGCCCATCAGAAAATTCACATCGGAGAGAAACCTTACAAGGTGTGTGGGAATGGCTTCAACTGGAATTCAAAACTTAAAGATCATCAGAGAGTCCACACTGGCGAGAAGCCGTACAAATGCAGTGCATGTGGTAAAGGCTTCAGTCATAGATCTGTTCTTAATGTTCATCAGAGAGTCCACACAGGAGAGAAGCCTTATAAGTGTGAGGAGTGTGATAAGGGTTTCAGTCGGAGTTCATACCTTCAAGCCCATCAGAGAGTCCACACAGGAGAAAAACCATACAAATGTGAGGCATGTGGGAAGGGCTTCAGTCGTAATTCATACCTTCAAGGGCATCAGAGAGTCCACACTGGCGAGAAACCATACAAGTGCGAGGAGTGTGGGAAGGGCTTCAGTCGGAGTTCACACCTTCAAGGCCACCAAAGGGTTCACACGGGAGAAAAACCATTCAAGTGTGAGGAGTGTGGGAAGGGCTTCAGTTGGAGCTTTAATCTTCAAATTCATCAGAGGGTTCACACAGGAGAGAAACCCTATAAATGTGGAGAATGTGAGAAGGGCTTCAGCAAGGCCTCAACTCTTTTGGCCCATCAGAGAGTCCACACAGGAGAGAAACCCTACCAGTGTGATGAGTGTGGTAAGAGCTTCAGTCAGAGGTCTTACCTTCAGAGCCATCAGAGTGTCCACACTGGAGAGAGACCATACATCTGTGAGGTTTGTGGGAAGGGTTTCAGTCAGAGAGCATATCTTCAAGGCCACCAGAGAGTCCACACCAGAGTGAAGCCGTATAAATGTGAGATGTGTGGGAAGGGCTTTAGTCAGAGCTCACGCCTTGAAGCACATCAGAGGGTCCACACCGGAGGGAAACCCTACAAATGTGCAGTGTGCACGAAGGGTTTCAGTGAGAGTTCCCGCCTCCAAGCCCATCAGAGGGTCCACACAGAAGGGAGGCCCTATAAATGTGAACAGTGCGGCAAGGGCTTCAGTGGGTTTTCAAGTCTTCAAGCCCATCACAGAGTCCACACTGGGGAAAAACCATACAAATGTGAAGTGTGTGGAAAGGGCTTCAGTCAGAGATCAAACCTCCAGGCTCATCAGAGAGTCCACACAGGAGAGAAACCCTACAAATGTGACGCGTGCGGTAAGGGTTTCCGTTGGAGTTCAGGTCTTCTAATTCATCAAAGAGTCCACAGTGGTGATAAATTCTATACAAGTGAAGAGTATAGTAAGGGTTATCCTTCATCAGAGAATCCGTACAGAAGCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040209:ENSBTAT00000055043:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development