MmuINT0178584 @ mm9
Intron Retention
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24908938-24912971:+
Coord C1 exon
chr7:24908938-24909033
Coord A exon
chr7:24909034-24909853
Coord C2 exon
chr7:24909854-24912971
Length
820 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
GATTCTCTTCCTCCTCGTAGGAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
CACATCAGCCCTTCAAACCGGGTCTGATAGCCCAGCTGGAGAATGGAGAGCAGCTTTGGATGGTGGAGGCTGAAGCCCATGCAGGTGGGCTCTCGG
Seq A exon
GTGAGAATGGTGCATTGGGGAGAGTAGGTGGGGTGCTTTCCAGAACATACCAGCTCCCCTGCTCTCCATTTCATAAATGGTATAATTAATTTTAAAGTGTTTAGATTAAGCAGGCTGCTCAGATGGCTCTGGAGTAAAGGTGCTTGGCACCAAGCCTGAGGACCCGTGTTCCTTTCCTAGAGCCCGTGTGCTGGAAGGAAGGAATGAACTGACTCCCCCAAGTTGTCCTCTGACCTCCACTGACATGCCATGGCTTGAGTACACACACAGGCACATGCACGCATGCATGCACAGGCACACACACGCATGCACTACACACATGCACACACATTCACACATACACATGTATACGTGCACACACACAGACACACACATACACATGCACACACATTCACGCACACACTCATGCACACACATATATACAGACACACATGCACATGCACACATACTCACACACGAACAAATATGCACACACACATGCGCACACACAGAAGACAAAAAAACTTTGGGAATATCCTTTTCTTTTGTCCACTGGATCACCTGACAACCCATGGTAAAGCTACAGTGACATGCGTAAAGTTCACTAGATCTTTTGAATGGGGCCATATTTAATATCCAGATTCTATTAGAAACCCCAGAACTTAAGGTACCCAGAGAGCCTCAGTTTTGTTGCTCCTATGTGTGTGTCAGAGGCTTTGAAAGACACCATAGAAACAGCATGACATGCCAGTGTCCCACTGTGAACAGTGTGAGATGCGGCAGGCTAATTGCAGTTAGGTGCTCACTTGTGCATTTGTCTGGATTCTCTTCCTCCTCGTAG
Seq C2 exon
GAAGAAGAAATGGACATGCTGTGGAGAACGCTGAAGACGTGGAAGTAAACTCCCTTTGTCCCGAGGACCTCTCCTTCTGTCAGACCTGGCCGTGGGGTGCATGCACATTACCCAGTGGTCAAGAGTTCATAAAAAGATGCCAAGGGAGTAATGGTGAATCTCAGAGCCAAGAAGCTTCCCCTCGCCTGGTGTGGGCAGGAATGCCCATGCAGATTTCTGAAGACGGGAATTACGGATTGCCTCCTGCACACGAAGACTCTGCTTCTATGAAAAATCAAGAGTTTCCTCCTCCAAGATCCCAGCAGTCTCAGGGGGAACCATATCTCGGCAGGCCATGTGTGACATGCCAGTGGAAAGGTCAGCAAACATCCATAAGAAATCACTTCTGTAGGTATGGCAGTGTCTGCTGGTCCCCCTACCACAGTGACAATGAGGAGCTATACAGCAAAGGAAAAAGCTATGGTTTCCATGACGACAGAGGAAAGACGGTGAAGGTATTATTACTTAATCAGGACTTTATTGAATTAGGGCCAGAGCCCTGCCCACGTACCAAGAACAGAGAAGCCTGGGGCCATGACAATGACCACAGCTCTCACACACATCAGCAGTGCCACTCAAGAGGGAAGCCGTGTACACGGAGTCTGTCTGGAGAGGGCTGTGGTGATAGGTCAGCCCTCCACGGTCATCCAGGTCTTGAGGCAGGAGATGAAGGTGCTGATGGGAGCCCACCTCTGCAGTCTTCTCCAAGAGTGTGTATGGAGCAAGTGCCACGCGAGTGCAGTGGGAATGTCCACTATGGTTCCCCTCTTAACACTTGTGGGTGTGCCCACCCAGGCAACACCTCCCAGACATGCAGCATCCCCAAGCAAGCTGTTGGTAGTCCTGTCCACTGCAATAGTACCTTTAGGGCCCATCCTAGGGAAGAGCCCAATAATTATGAGGAGAATAGGAATGTTTTTAATCAGAGTTCATGTCTTCAAGTTAGTCGGAAAATCGGTGCTGAAGAGAAGCTATGTCAAGGTGTGGAGTGTAGAAAAAATTTCACACACTGCTCAAGTCTGAACATTCCACACAGAGTCCCTGTGGAGGAGACTCTCTGTAACCCTGATTGTGGTAACCACTTCAGTTTGCCTCCACATTTTCAGGACTTTCCAGGAGTGCGTGCCAGGGAACAACCACACAATCGTTTGTGCCGTACAGGCTTCAGTCAAACTTTGTGCCTTCAAGGCCATCAGAAACTCCACATTCGAGAAAAGCCTTCTCATAGAGAGGGTGGAAGTGGCTGTAACTGGAGTTCCACCCCCAAGGATCCTCAGAAACAGAAACTGCACAAATGCAATGCCTGTGGGAAGGGCTTCAGTCACAGATCAGTTCTGGACATTCATCACAGAATCCACACAGGAGAGAAGCCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCCGGAGTGCATACCTGCAAGGCCACCAGAGAGTTCACACAGGAGAGAAACCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCCGGAGTTCACACCTGCAAGGCCACCAGAGAGTTCACACAGGAGAGAAACCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCTGGAGCTTTAACCTTCAAATCCATCAGCGGGTTCACACTGGAGAGAAACCCTATAAATGTGGAGAGTGTGGCAAAGGCTTCAGTAAGGCCTCAACTCTCCTGGCCCACGAGAGAGTCCACACAGGAGAGAAACCTTACCAGTGTCATGAGTGCGGCAAGAACTTTAGTCAGAAATCCTACCTTCAAAGCCATCAGAGTGTCCACTCTGGAGAGAGACCACATATATGTGAGGTGTGTGGGAAGGGCTTCAGTCAGAGAGCATATCTACAAGGTCACCTGAGAGTCCACACTCGAGTAAAACCCTACAAATGTGAGGTGTGTGGGAAGGGCTTCAGTCAGGGTTCACGCCTTGAAGCACACCAGAGGGTCCACACAGGGCGAAAACCATTCAAATGTGAGACCTGCACAAAGGGATTCAGTGAGAGTTCCCGCCTCCAGGCACATCAGAGGATCCATGAGGAAGGAAGACCCTACAAATGTGACCAGTGTGGTAAGGGCTTCAGTGGCTATTCCAGTCTCCAAGCCCATCACCGAGTCCACACTGGGGAGAAGCCATACAAATGTGAGGTGTGTGGGAAGGGCTTCAGTCAGAGATCGAATCTCCAAGCTCATCAGCGCGTGCACACAGGAGAGAAACCGTACACGTGTGATGCGTGTGGTAAGGGTTTCCGTTGGAGCTCAGGCCTTCTGATCCATCAAAGGGCCCATAGCAGTGATACATTCTACAGGAGTGGAGAGTGTGGGAGCAGTTATCCACCTGAGAACCTATGCAGAAATGAAGGCCTGTAAGATGCCTTTCTGGTTTTTTTGTTTTTGTTTTAATGGAGACATACTGTTTGTACCCACCATGAACACTGACAGTGGTTGGGAACCACACAGCAGAGAGCTCTAATGAAAGGGCTCTACTGAGATTTCGAAACCTCAACAAGCTATGGCGGAGAACCAAGAACTTCCCAACGCCGCACAGTTCAGCGGGGATTAACAAAAGAATGATATCTATGTCTGCTAGAACATAAGCTTGGTGATAGAGGAACATGCCTGCTGCCAAGGCTGCCGGAGCGTGGCTGGAGAGATGGCTCAGCAGTGACGAACGCTGGCTGCTTTTGAAGAGGACCACTACATGGCAGCTGTCTGACCCCTTCCTGGTGCCCAGACGTATGTGCAGGCAAAAGACTCACAGAAAAATAAATACATAAAATGGACCCATGCTGCTCCTTTATAACTTAACATATCACTCAGTGCTCTTTGCTCGATGAGTAAAAAATTATGCAAAGAAACAACACTTGAAACTATTAAATTTATTTCAGAATGGATTAGGAGAGATCTTATCAAGATAGGAAAGATAGCTTATATCAGTGCAAATAAATGAGTTCCATTTGAAATATAGGACCTTCAGGAATATTTTCATCTGCAATAACCACAGTTTGGCTAGTTAGCATCCCCTTGTCTTGTCCTAGGCAGACAGGTGCACAATTCCTTCTTCTATAGGGTGCACTGTCAAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675-Zfp112:NM_021307:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCTTTGGATGGTGGAG
R:
GACTGCTGGGATCTTGGAGGA
Band lengths:
356-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: