HsaINT0185494 @ hg19
Intron Retention
Gene
ENSG00000062370 | ZFP112
Description
zinc finger protein 112 homolog (mouse) [Source:HGNC Symbol;Acc:13021]
Coordinates
chr19:44830706-44840871:-
Coord C1 exon
chr19:44840776-44840871
Coord A exon
chr19:44834090-44840775
Coord C2 exon
chr19:44830706-44834089
Length
6686 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATTCTCTTTATCCTTATAGGAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
CACATCAGCCCTTCAAGCCAGACCTAATATCCCAGCTGGAGAGAGAAGAAAAGCTTTTGATGGTGGAGACAGAAACCCCAAGAGATGGATGTTCAG
Seq A exon
GTGAGAACTGTGCTGCAGGAACACAGCAGCCAGGGAGCCCCTTCTAGAACATGAGTCAGAACACATCACTTCTCTGTTTAAGCTTTCCTGTGGCTCCCCATTTCACACATAGTAAGTTTAAAGTACTTAAAGTGGTCTATTAGGTCCTAAGGTATCTGTCCCCTCAACCTCTTCTCACTTTCCATATTCACCTACCATTGTTTGTTTTTGCTCATTCAGTCTGTTTCAGAGGCACTGCCCCATGATTGCCCCCTCAGACCTCTCAATTATGCTTCTGTGTCAATTTCCTTGACTTGCTTTTCTCTCTGAATGAATTGGGTAATAGATGCATGATCTTTGCTCTCTTCAATTCACCCTGAGGCAGCTAATAGGTGTAGAATAAATCTGTGTAATTGAAGGGTATTCTAGAATACTGTTTCTCATCTGATGGATGCCTGTTTTAACTGCTTAGCTGTCCTTGAGTATTCATAGATGGGTAGCCATTAATCCTAAAAGATAAGAATAGCCAATCAGCTAAAGTAAGTATCAAAAATGACCAATGCCAACATTATAACTGGTCTTCCTCATGCAGCATTTTCAAGTGAGACACCCTTGTATTCATATGTCCATCTTCTTATCCTCCCATTCTGTCCCATACTCTCGCACCCAAACAATCTCTTGACATAGCCACAGTCTTAAAGTAGAATCTTCAAGTTGGACATTTATGTGAATCCAAACATTTTGATAGTTTCTTGAGTCCTCAAGACTGACATCAAAAGCCACCGTCGCAACTGTGTAGCTAAGGATGCTGCTGGATAAGAAGAAAGAGTCAACAGAAAATTCAAAACAAATTAACTCATTTCTATAATGGTTTGTTTCCATCTTGGTTAAGATTCAGGGTCCTACATGGTACCCTTGAGAGTAGGAGTTAAACTTTTTCTCTAAAGGTCCAAGTAGTAAATACTTTAGATTTTCCTGGCCACATGTGCTCTTTGTCACAGTCTTTGTTTTTCTTACACCACTTTAAAAATGTAGAAAGCGTTCTTGGCTCCTGGGTTGTACAGAAACAGGCCGAGGCCATGCTGTGCCAGTCTACCTTCCTGATACTGTCAGCTGGAACATAATGTCACCTTTTAAAATACCTTAATTTTTTTACCTATACTAACATGATCATATACCTCATATTAATGTAAAAATTTGTTATGTACATTCTTGTTTTTAATATACTAATTTTTCTTCTTTGCCGTTACCTTGGGGAAATCCCTCCCAGTCTAAGATTATAACTCTTGTTTTTGTAATGGATGCATAATACTCTAATAAACAAACTAGTTACTTCCAAGATACAATGGGGCTACAGCCTTTGGGTAAATGCCCCCATTCTGAAAGGGAGAAATCAGGCAAAACAAAGGGGCTGCAGGCCCCATGCCAATCTGAAACCCAGCAGGGCAGTCATTAAATCTCAGAGTTCGAAAATAATCTCCTTTGACTCCATGTCTCACATCCAGGCATGCTGATGCAAGGGATGAGCTCCCAAGGCCTTGGGCATCTCTGCCTCTGTGGCTCTGCAGGGTATAGCCCACTTGGCTATTTTCATGAGCTGGCGTTGAGTGCCTGCATCTTTTCCAGGCACGTGGTGGAAGCTGTTGGTGGGTCTGGGGTCTGGAGGACGGTGGCCCTCTTCTCACAGCTCCACTAGGCAATGCCTCAGTGGGGACTCTGGGGGCTCCAACCCCACATTTCCCTTCTCCATTGACCTAGTAGAGGTTCTCCATGAGGGCTCCACCCCTGCAGCAGACTTCTGCCTGGACATCCAGGTGTTTCTATAAATCCTCTGAAATCTGGGCAGAGGTTCCCAAGCCTCAGCTCTTGCCCTCTGCACACCACAGGCCCAACAGTACGTGGAAGCTGCCAAGGCTTGGGGTTTGCACCCTCTGAAGCAATGGCCTGAGCTATACCTTGGCCCCTTTTAGCCATGGCTGGAACTGGAGCAGCTACAATGCAGGGTGCCGTGTCCTTCAGCTGTAGAAAACAGCAGGGCCCTGGGCCTGAGCCACAGAACTATTTTTCCCTCCTAGGCCTTCAGGCCTGTGGTAGGAGGGACTGTCATGACTGGCTCTGAAATGCCCTGGAGGCATTTTCCCCATTTTCTTGGCTATTAACATTCAGCTCCTCTTTACTTAGGCACATTTCTGCAGCCTTGAATTTCTCCCCAGAAAATTGGTTTTTCTTTTCTACCACATGATCAGGCTGCAAATTTTTCAAATTTTTATGCTCTGCTTCTTTTTTAAATATAAGTTCCAGTTTCAGATAATCTCTTTGCCCATAAATATGAGCATATGCTGTTAGAAGCAGCCAGACCACATCTTGAATGCTTTGCTGCTTAGAAATTTATTCCACCAGATAACCTAAATCATCCCTATCAAGTTCAAAGTTCCACAGATCTTTGGAGCAGAGGCATAATGCTGCCAGTCTCTTTGCTAAAGCATAGCACCAATGTTGGGAAAATGTATAAATGCATTTACAAACCTAAATATATCTAAATATATCACCAGTTCCAGTCCCCAATAACTTCCTCATCTCCATCTGAGACCACCTCAGCCTGGACTTCACTGTCCATATCACTATCCGTATTTTGTTCAAAACCATGTAACAATTCTCTAGGAGATTCCAAACTTTCCCTCATCTTCCTGTCTTCTTCTGAACCCTCCAAATTATTACAACCTCTGCCCATTACCTGTTTCCAAAGTGACTTCCACGTTTTCAGGTATCTTTATAGCAATGCCCCACTTTTCTGGTACCAATTTTCTTTATTCGTCCATTCTCCCATTGCTGTAAAGAACTACCTGAGACCAGGTAATTTATAAAGAAAAGAGGTTTAATTGACTCATGGTTCCATAGGCTATACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTATAAATATGGCAGATGGTGAAGGGGAAGGAGGCATGTTTTACATGGCAGAGAAAGAGGAAGAGAAAGAGGGCAGGAAGTGCTACATGCTTTCAAACAACCAGATCTCTTGAGAACTCTGTCACGAGACAGCACTTGGGGGATGGTGCTAAACCATTAGAAAGCACCCCCATGATCCAATCACCTCCCACCAGGCCTCAACTCCAACACTGGGAATTACAATTCAACATGAGATTTGGGTGGGGACGCAGAGCGAAACCATATCAGTGGTTAAGAAAGGAGTCAGCACAGCAGCTTAAATATTTGTGATCAAAACATTGTCACCACTATACCTTGTATTGTCTCTATCTAAAAGCGAAGTAAGAACGGAAGGTGATCTCAGCCTGGGTAACCTGAGCTGATGTTCTCGCTTAGCTTTTATTAAAGAAGAAGAAGAAGAAGACATAAACAAAGATTTTTTTTCTCTGAGTTCATTATAGCTAACTATTAAATTCAAAGGAATTACTTGTCTTTATGACAAATATAGCACCTTTGTTATTGAATTGATCAATTTGGGTTGCTTGAATCATTGACTTTCTCAACCTCTAAGTGCTAAAGCAGGATTGCTATGAAGATGTAATAAATTCTCAACCTTCTTACCTCAAATGATGTCTTCGGCATCTTTTGTCATGCTTAGTTTCTCCATCAAATAAAGTTCATTTATAAACTTAACACAATTTCTTATTACCATTCTACCATTGATATTGAAATAGAACTTAAATGTTGAGTTATTTAAATAAAGTAACAAGGTGTTTCGGTCTATACCATTGACTAAAGGAAATTAATGTTGTTACATGTGTGGTCTTTTTTAGAAGAGTGTGAAACAAAGTGAAATGACCTTTTATTTTTTTTCTTCCTCTATGTCCTTAACATTGCAAAACCCACTGCTCAGAGAGAAACTTTAATCTCATATATTTGAGAGATTTTTATATCATGAATTATGTACTAATTTGCATTGAAACAGTTGCTTTGTGAGAAATTGGGTTTTGACTAACAAGCTACTTTCATGTTCTCAAGCCACTACATCAGTCCCAAAAGACAGGACATATTAAACTGTATCTTTATGGATGTATATTGAGTGTTTTTTATAATAGTAAAACAAAACTACAAGGATTATGATTAACCCTAGCTGGAAGCTCAAACTTCTCACATATAAGCTATATACTTTATCTGATATGCCTCCTATAATATATCCCTTCATTTCATCATTATATGATAAAATATCATTATAATAACTGAAAGCTTCACTTTTGAGAAGGCAAAGACATCAGTAAATGTGCTTTTAAAGTACCAAGATGCATACCTACTGATATACCTTGAAGTGTTATCCCACAATCAGTGTGCTGCCCCAGAGCCTAGTGATACAGATTCATCAGTGTGGCCTTTTCTTTTTTCCTTTTTTAAAAGTTGGGATAGGGTAGGGCTTACGGGTAAGATTTTGTTCAAGAAAAATTACACCATTTTGGGTTTTTTTGAGACAGAGTCTTGCCATGCTGCCCAGGCTGGAGTTGCAGTGGCTGTTCACAGGTGCAATTATATTAATAGGTCACTGCATCCTCAGATGCCTGGGCTCAAGCATTTCTCCTGCCTCAGCTTTCTGAGTAGCTGGGTCTACAGGATTGCGTCACCATGCCTGGCTCACAGTTGTACCATTTAAAAAGTTACTTTAAAAATGAGAAAGACTCAATCCACAGGCCCTGCCTATGGGTCTTTTTGATCTTACATTTTTATTTCATCCACAGTAGATTCTTGTGACCTTTGCTTTTCTCATCAGCAGTATCACTCTGAATTGTCGCCCTACGTCTCCTATAGCCTTTCAGCTTTCCAGCAAAGTTGCCACCATCACCAGTTCCTTTCCCATTTAAAAAGCTACATTACATGCTCTTTTAGTTCTATGAGTGAGAGCAACTCAAACTATGATTTATTCATCAATGTTTATTGAGCAACTACTGTTCACTTGGCAGTGAAAGGAATGCAGTGCACAAAACAGTGTTTGTTTTCATGGATAATACATTCCAGTGTGGAGAGGCAGACAAACACAAAGAAATAAGGCAGAATTATGTTTGAGGGTAATATTCATGAAAAAACATCCCTTTTACTGCTTTTCTTCTGGATATTATAGAGACTTAATCTACTTCTAAGTGTTAGAAGAATGCATGTTATTAATTCAACCCTGTTTAACCAGTTGTCCTTAGGGAGGATATTTGTCACTAGTATATGAAGATCTGCTGTCTGCTTATAATCTGAGCTTTAATAACTAGGTAACTATTTCTACCCAAATATCCTGTCTTCAACCCTTTCTGGTGCCTCAAATTTCCTAAACACTAACATAATTTTCCAGTAAAATGGCACAAGCAAAAGTCAGTATTCATTGAGTTCTGTTCCTGGCTAATGAGCACCTCAGAGGACACCTACAGGTGCCATAATTTTTTTCTGATTTTTTTAGTTGAATTCTGTCACAGTCTTTCACATTTTGACCTACACCATGGCCGTTGATAATTGTGAAATATCTTTTGAAAAGAGTTAAAATCTGTAATGGCCTACAGGGACTTAGAAGAGCTTATTATTCTCTAAGCCCTCTTAGCGCAGCTGGCAGCGCGTTAGTCTCATAATCTGAAGAAGAGCTTATTATTCTCATGAGGATAAATAGCTCATTAGTGACAGGATATGTGATGCCTCAAACATAAAGTAAAAGTCTGTATTTACCTTCTTCAGCATATCATTTAACGCACACAGTACACTTACAAATGAACAACATTATCATGTTTATGTGCCAGACAAAAAAGAAAAACTTATTAGGACAAAAGGCGTTTGTCCATTTGCAACTATATTTTTCCAGTTTTAAGAACATCCTCTTTTCCCCTTCAGATCTCCTGGAAACCCATGATTAATCCATGATAACATGTTTATAGTTGTGTTGTTTTGTTTCGTTTGAGACAGGATCTCATTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTTAGCTCACTGCAACCTCTGCCTCATGGGTTCAAGTTATTCTCCTGCCTCAGCCTCCTCAGTAACGGGGACTACAGGTGTGCAACACCACGCCTGGCTAATTTTTGTACTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCACCCGACTTGGCCTCCCAAAGTGCTAGGGTTACAGGCATGAGCCACCATGCCCAGCCATGTTTATGGTTTTACTAAGCCTTTTGAACACAGCCATCATGTTCGATGTCCAGGTCGTGCTGCAAAGTCCTGATTTTGAGGCATCAGATATCCTGAATTATGTAGATGCTATTTGTATGTAGGTTAAATATCCCTTCTCCAAAATGCTTGGGACCAGAAGTGTTTTGTATTTCAAATATTTTCAGATTTTAGAGTATTTGCATTATACTTACCAGTTGAGCATCCCTAATCAGAAATCTGAAATACTCCAATGAGTATTTCCTTTGAACATCATGTAGAACATTAAAAAAGTTTTGGATTTTGGAGCATTTCACATTTCAGATTTTTGGATTGAGAATACTCAACCTGTAACTGGTATAGCCAAAGAGGAGATATTTTCTAAGTATTCTTAGAAATAGTGGCATGAATTTTCCTCTGGTTCATTCAAGTTTCATGTTATGACCTAAGTGTAAAATCTTCAAATCTCTTGAATAAAGCATTCACTCGTGCACATCTGAATTCTCTTTATCCTTATAG
Seq C2 exon
GAAGGAAGAATCAACAAAAGATGGAGAGTATTCAGGAAGTAACAGTAAGCTACTTTTCCCCCAAAGAGCTTTCCTCCCGTCAGACCTGGCAACAAAGTGCAGGTGGGTTAATCAGGTGTCAAGATTTCCTGAAAGTTTTTCAAGGGAAGAATTCTCAGTTGCAAGAACAAGGTAATTCCCTCGGCCAGGTTTGGGCAGGAATACCAGTTCAGATTTCTGAAGATAAGAACTATATATTCACTCATATAGGGAATGGCTCCAATTATATAAAAAGTCAAGGGTATCCATCTTGGAGGGCACATCATTCTTGGAGGAAAATGTATCTGAAAGAGTCACATAATTATCAGTGTAGATGTCAGCAAATTTCCATGAAAAATCATTTCTGTAAGTGTGACAGTGTCAGTTGGCTCTCACATCACAATGATAAACTGGAAGTACACAGAAAAGAAAACTACAGCTGCCATGACTGTGGAGAAGATATCATGAAGGTATCATTACTTAATCAGGAGTCAATTCAAACAGAGGAGAAGCCCTATCCATGTACTGGGTATAGAAAAGCCTTCAGTAATGACTCCAGCTCTGAGGTTCATCAGCAGTTCCACTTGGAAGGGAAGCCCTATACATACAGTTCATGTGGAAAGGGCTGTAATTATAGTTCACTTCTTCATATTCATCAAAATATTGAGAGAGAAGATGATATTGAGAATTCACATCTGAAATCCTATCAGAGAGTGCATACAGAGGAGAAACCATGCAAATGTGGTGAATATGGTGAGAACTTCAATCACTGTTCCCCTCTTAACACTTATGAACTTATCCACACAGGTGAGATGTCCTATAGGCACAACATTTATGAGAAAGCCTTCAGTCATAGCTTAGACCTTAATAGTATTTTTAGGGTCCATACTAGGGATGAACCCCATGAATATGAGGAAAATGAGAATGTCTTTAATCAGAGTTCATGTCTTCAAGTCCATCAAAAAATCCACACTGAAGAGAAACTATACACAGATATAGAGTATGGAAAGAGTTTCATTTGTAGTTCAAATCTTGACATTCAGCATAGGGTTCATATGGAAGAGAATTCATATAATTCTGAGGAGTGTGGTAATGGCTTCAGTCTGGCCTCACATTTTCAGGACCTTCAGATAGTCCACACTAAGGAACAACCATATAAACGCTATGTGTGTAGTAACAGCTTCAGCCATAATTTATATCTTCAAGGTCATCCAAAAATTCACATTGGAGAGAAACCACGTAAGGAGCATGGGAATGGCTTCAACTGGAGCTCAAAACTTAAAGATCATCAGAGAGTCCACACTGGACAGAAGCCATACAAATGCAATATATGCGGCAAAGGTTTCAATCATAGATCAGTTCTGAATGTTCATCAGAGAGTCCACACAGGAGAGAAACCTTATAAATGCGAGGAATGTGATAAGGGATTCAGTCGGAGTTCATATCTTCAAGCCCATCAGAGAGTCCACACTGGAGAAAAACCTTATAAATGTGAGGAATGTGGGAAGGGGTTCAGTCGAAATTCATACCTTCAAGGCCATCAGAGAGTTCACACTGGAGAAAAACCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGTCGGAGTTCACACCTTCAAGGCCATCAGAGAGTCCACACTGGAGAAAAACCATTCAAATGTGAGGAATGTGGGAAGGGGTTCAGTTGGAGCTTTAATCTTCAAATTCATCAGAGGGTTCACACAGGAGAAAAACCCTATAAATGTGAAGAATGTGGTAAAGGCTTCAGTAAGGCCTCAACACTTTTGGCCCATCAGAGGGTCCACACGGGAGAGAAGCCATACCAATGTGATGAGTGTGGTAAGAGTTTCAGTCAGAGATCATACCTTCAGAGTCATCAGAGTGTCCATTCTGGAGAAAGACCATATATATGTGAGGTATGTGGAAAGGGCTTCAGTCAGAGAGCATATCTTCAAGGTCATCAGAGAGTCCACACTAGAGTGAAACCGTATAAATGTGAGATGTGTGGGAAGGGCTTTAGTCAGAGTTCGCGCCTTGAAGCACATCGGAGGGTTCACACAGGAGGGAAACCATACAAATGTGAGGTGTGTACAAAGGGTTTCAGTGAGAGTTCACGCCTTCAAGCACACCAAAGGGTTCATGTGGAAGGGAGACCCTATAAATGTGAACAGTGTGGTAAGGGTTTCAGTGGGTATTCAAGTCTTCAAGCCCATCACAGAGTCCACACAGGAGAGAAACCATACAAATGTGAGGTATGTGGAAAGGGCTTCAGTCAGAGATCAAATCTTCAGGCTCACCAGAGAGTCCACACAGGAGAGAAACCATACAAATGTGATGCATGTGGTAAGGGTTTCCGTTGGAGCTCAGGTCTTCTCATTCATCAAAGAGTCCATAGTAGTGATAAATTCTATAAAAGCGAAGACTATGGTAAGGACTACCCTTCATCAGAGAATCTACACAGAAATGAAGATTCTGTTTTGTTTTGAAGTCCTCAAATGGGAGCTGAAATTTTCCAGTCACTAGAGTTCTTTCAGTAGAAAAAGAATTTTTAAAAATTAAAATGTAATGTTGCTGCCCAACTTCAACATTCATAATGGCCAGGAGACCACACAACAGAGACATTTAATGAGAGGGGTTTCACGAGGGATTTTGTTAGAACTTTAACATCAGTCATTGCACAGGAGCTAAGGCTTATAAAATATGAGTATGGTCAGGAATTTAATAAAAGTACAGTGATGAGCATGCCTAAATCCATGTTCTCTAGAATGTAAGCTTGGTGAAAGAAGGGACTTTGTTCATTGCTAGTCTACAAAACTAGGACATTTCATAACGCAATGTAGGTGCTCAGTACTTTTTGCTAAATAACTAAAAGTATGTAAAGGTAAAAGGTTTGAAATTTTTAAGCGCATTTTTTAAAACTTAAAATGTATTTGGAGGAGAAATCCTGCAAGTAATCTTAATAAAATCATTTCAAGTAAATATTTGAAATGTAGAACAATAAGCATTATGATGATCTGAAATAACATTAATTTGATTGTAACCCTATTGGGGTTAGTTCCCACCCTTTGTTCCATCTTGAGCAGAGATGTGCTGCATTTCTTAACGTTTGGTCTCTATACATTATACCATCTGCTGAAGTTTAGCTTTGTGTGTGTGTATATGTACCCATGTGTGCACTTGAAATATCAGTACAAACTGATAAACAATGTTTCTGGTTAATGTTGCAAAAATGGAACACTGTATTTTACATAATTGATTTTCTACTCCTGCCCTGTGAATTAAGGCAGAGTTTTACTGTAATATTTGCAAGTATCCAAAATGGTTACTGATGACAAATACTTTTTAATAAATGTCAAAATCACAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-ZFP112:NM_001083335:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)