RnoINT0167749 @ rn6
Intron Retention
Gene
ENSRNOG00000029022 | Zfp112
Description
zinc finger protein 112 [Source:RGD Symbol;Acc:1305757]
Coordinates
chr1:80954858-80958908:+
Coord C1 exon
chr1:80954858-80955074
Coord A exon
chr1:80955075-80955947
Coord C2 exon
chr1:80955948-80958908
Length
873 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCGGATTCTCCTCCCCATAGGAA
3' ss Score
10.48
Exon sequences
Seq C1 exon
CCGTCCTTTCCCTCCAAATGCAGGTACAACAGACATACACCTCCATACCCAGCCTTTTTTTTTTTTTTAATCTCATTTTGACAAGGTAGACATCAAACGCTTGCTTTTCTTTTTTCACCAGCACATCAGCCTTTCAAACCAGGTCTGATAGCCCAGCTGGAGAATGACGAGAAGCTTTGGATGGTGGCGGCAGACGCCCAAGCGGGTGGGCTCTCAG
Seq A exon
GTGAGAGTGGTGCATCGGGGAGAGTGAGTGGGAGGATGTGCCAGCTCCCGCCTTAATGCTCCCCTGCTCCACACTTCCTAACTACTCCAATGGACTTCAAAGTGCTTAAGCAGGCTGGTCAGATGGCACCACCCATGTGGTGGAAAGAAGTGAACTGACTTCTCCAAGTTGAGTACTTGAGTACGCGTGCGCACACACACACACACACACACACACAGAGGCACACACAGAGTCATGCACATGCATACACACATGTACACACATGTGCACGCACACACATATACAGATACTCACACATGCACACATTCACACATACACATCTACACGCACACATACATGCACACACAGAAGCATGCACACGCATACACATTCACATACATGTACACATGTGCATGCACACTCATGTACACACATATACAGACACACATGCACCCCCCCCACATGCACACACACAGAGACACACAGGCATGCACATGCACACACACACACTCATGCACACACATACACATATACACACACACACACACACACATACACAGAAGACAAAAGACACTTTTCTACTTTGGAATATCCCTTTTCTTTTGTCCACTGGATCACCCAACAACCCGTGGTAAAGGCACAGTGACATGCATAAAGTTCACTGGATCTTTTGAATGGGGCTATATTTTACGTCCAGATTTTATTATAAAACCCAGAACTTAAGGTACCTAGAGAGCCTCAGTTTTGCGGCTCCTAGGTGTGTATCAGGTGCCTTGCAAGGACCCATAGAAACATTGTGATATGCCAGTGTCCTGCTGTGAGCAGAGTGCAAAGTGAGGCAGTCTCTCCATAAGGCGTTCACTTGTGCATTTGCCCGGATTCTCCTCCCCATAG
Seq C2 exon
GAAGAAGGAGTGGACATACTGTGGAGAACGCTGAAGACACAGAGGAATTAAACTCCCTTTGTCCTGAGGAACTCTCCTGTCAGACCTGGCCATGGGGTCAAGAGTTTATAAAAAGATGCCAAGAGAGTACCAGTGAATCTTGGCGCCAAGGAGGGCCTCCCTGCCTGCTGTGGGCAGGAATGCCCGTTCAGATTTCCGAAGATGGGAATTACGTGTTGCCTCCTGTACATGAAGACTCTGCTTCCATAGAACATCCAGAGTTTCCTTCTCAGAGATGCCAGCAGTCATGGGAGGAGCCACATCTTGGCAGGCCCTGTAATTGCCTGTGGAAAGGTCAGCAAACATCATTAAGATATCACTTCTGTAGGTGTGACAGCATCGGCTGGTCCTCCTACCACAGTGATGAGGGGCTACATGGCAAAGGAAAAAGCTACCGTTTCCATGACCACAGAGGAGAGACTATGAAGGCATCATTACTTAATCAGGACTTGATTGAATTAGGGCCGGAGCCCTGCCCATGTACCAAGTATAGAAAATCCTGGGGCCATGACGATAGCCACCACAGCTCTCACACACATCAGCAGTGCCGCTCAGGAGGGAAGCCCCATACACACAGTCCGTGTGGAGAGGGCTGTGGGAATAGGTCAGCTCTTCATGGCCATCCAGATCTTGAGACAGGAGATGAAGGTGTTGTTAGGAGCCCACCTCCTCAGTCACCTCAGAGAGCGCATATGGAGCAAGTGCCATACAAGTGCAGTGAGAATGTCCACCATGGTTCCCCTCTTAACACTTGTGGGTGTGCGCACCCAGGCAACACCTCCCAGAAATGCAGCATCCCGGAGCAAGCTGTTGGTAGTTGTTCCCACCGCAAGAGAACTTTTAGGGCTCATTCTGGAGAAGAACCCAATAATCATGAGGAGAATGGGAATGTTCTTAATCAGAGTTTATGTCTTCAAGTGAATCGGAAAATAAGTGCCGAAGAGAAACTGTGTCAAGGTGCGGAATGTAGGAAAGATTTCACACATTGCTCAAACCTGAACAGTCCACACAGAGTTCATGTGGAAGAGACTCTGTGTAACCCTGACTGTGGTAACCACTTCAGTCTGCCCCCACATTTTCAGGACTTCCCAGCAGTGCGCCCCCAGGGACAACCACACAATCGCACATGCTGTACCAGCTTCGGTCAAACTTTGTGCCTTCAAGGCCATCAGAAACTTCACATTCGAGAGAAGCCCTTTCGTAAAGAGGGTGGAAATGGCTGTAACTGGGGTTCCACCCCCAAGGATTGTGAGAAACAGATGCTGCATAAATGCAGCGCCTGTGGGAAGGGCTTCAGTCACAGACGGGCTCTTCAAGTTCATCAGAGAATCCACACAGGGGAGAAGCCATTCAAGTGTGGGGAGTGTGGGAAGGGGTTCAGCCGGAGTGCCTACCTTCAAGCCCACCAGAGAGTTCACACCGGAGAGAAACCGTATAAGTGTGGGGAGTGTGGGAAGGGGTTCAGCCGCAGTGCATACCTGCAGGGCCACCAGAGAGTTCACACCGGAGAGAAACCGTACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCCGGAGTTCACACCTGCAAGGCCACCAGAGAGTTCACACCGGAGAGAAACCGTACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGCTGGAGCTTCAATCTTCAGATCCATCAGCGGGTTCACACCGGAGAGAAACCCTATAAATGTGGAGAATGTGGCAAAGGCTTCAGTAAGGCCTCAACTCTCCTGGCCCATGAGAGAATCCACACAGGAGAGAAACCTTACCAGTGTCACGAGTGCGGCAAGAACTTTAGTCAGAAATCCTACCTTCAAAGCCATCAGAGCGTGCACTCTGGAGAGAGACCATATATATGTGAGGTGTGTGGGAAGGGCTTCAGTCAGAGAGCATACCTACAAGGTCACCAGAGAGTCCACACTCTAGTGAAACCATATAACTGTGAGGTGTGTGGGAAAGGCTTCAGTCAGGGTTCCCGCCTCGAGGCACACCGGAGGGTCCACGCAGGGGGAAAACCATACAAGTGTGAGACGTGCGCAAAGGGCTTCAGCGAGAGCGCCGGCCTCCAGGCGCATCAGAGGATCCACGCAGAAGGGAGAGCCTACAAGTGTGAACTGTGCGGTAAGGGCTTCAGCGGCTATTCCGGTCTCCAAGCCCATCAGCGAGTCCACACGGGGGAGAAGCCATACAAATGCGAGGTGTGTGGGAAGGACTTCAGTCAGAGATCCAATCTCCAGGCTCATCAGCGTGTGCACACAGGAGAGAAACCTTACACGTGTGACGCGTGTGGTAAGGGTTTCCGGTGGAGCTCGGGCCTCCTGGTCCATCAAAGGGCCCACAGCAATGATAAATTCTGTAGGAACGGAGAGTTCAGAAGCAGTTATCTGCCTGAGAACCTGGGCAGAAACGAAGGCCTGTAACGCCGTTCTGTTTTGTTAATGGAGACCTACTGTTTGTACCCACCATGAACACCGACGGTGGTTGGGAAGGGACACAGCATTGCAAAAAAGGACTTTACTGAGAGTTTTCAAAACCTCAACAAGCTATGGCTGAGATCCAAGAACTTCCCAACACCACACACTTCAGCGGGGATTAACAAAAGAGTGATATCCACTCCACCAGTAGCATTAGCTTGGTGTCAGGGGAGCCTGTCCGCCGGCAAGGCTGCCAGGCGTGACTGGAGAGATGGCTCAGCTGTGACAAGTGGAAGAGGAACACATGGCAGCTATCTGACACCCTCACGGTGCCCAGACCTACGTGACTCTCCTCTACAGGAAAATAAATGAATAAAACGAAGCCATGCGCCCTCATGACTTAACGCATTCCTTACTCAGTGCTTTTTGCTCCATGAGTAAAAATATGCAAAGACACAACATTTGAAACTCTTACGTTTATTTCAAAACCGATCAGGAGAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029022:ENSRNOT00000030440:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATAGCCCAGCTGGAGA
R:
TGCTGGCATCTCTGAGAAGGA
Band lengths:
358-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]