HsaINT0185494 @ hg38
Intron Retention
Gene
ENSG00000062370 | ZNF112
Description
zinc finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12892]
Coordinates
chr19:44326555-44336718:-
Coord C1 exon
chr19:44336623-44336718
Coord A exon
chr19:44329937-44336622
Coord C2 exon
chr19:44326555-44329936
Length
6686 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATTCTCTTTATCCTTATAGGAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
CACATCAGCCCTTCAAGCCAGACCTAATATCCCAGCTGGAGAGAGAAGAAAAGCTTTTGATGGTGGAGACAGAAACCCCAAGAGATGGATGTTCAG
Seq A exon
GTGAGAACTGTGCTGCAGGAACACAGCAGCCAGGGAGCCCCTTCTAGAACATGAGTCAGAACACATCACTTCTCTGTTTAAGCTTTCCTGTGGCTCCCCATTTCACACATAGTAAGTTTAAAGTACTTAAAGTGGTCTATTAGGTCCTAAGGTATCTGTCCCCTCAACCTCTTCTCACTTTCCATATTCACCTACCATTGTTTGTTTTTGCTCATTCAGTCTGTTTCAGAGGCACTGCCCCATGATTGCCCCCTCAGACCTCTCAATTATGCTTCTGTGTCAATTTCCTTGACTTGCTTTTCTCTCTGAATGAATTGGGTAATAGATGCATGATCTTTGCTCTCTTCAATTCACCCTGAGGCAGCTAATAGGTGTAGAATAAATCTGTGTAATTGAAGGGTATTCTAGAATACTGTTTCTCATCTGATGGATGCCTGTTTTAACTGCTTAGCTGTCCTTGAGTATTCATAGATGGGTAGCCATTAATCCTAAAAGATAAGAATAGCCAATCAGCTAAAGTAAGTATCAAAAATGACCAATGCCAACATTATAACTGGTCTTCCTCATGCAGCATTTTCAAGTGAGACACCCTTGTATTCATATGTCCATCTTCTTATCCTCCCATTCTGTCCCATACTCTCGCACCCAAACAATCTCTTGACATAGCCACAGTCTTAAAGTAGAATCTTCAAGTTGGACATTTATGTGAATCCAAACATTTTGATAGTTTCTTGAGTCCTCAAGACTGACATCAAAAGCCACCGTCGCAACTGTGTAGCTAAGGATGCTGCTGGATAAGAAGAAAGAGTCAACAGAAAATTCAAAACAAATTAACTCATTTCTATAATGGTTTGTTTCCATCTTGGTTAAGATTCAGGGTCCTACATGGTACCCTTGAGAGTAGGAGTTAAACTTTTTCTCTAAAGGTCCAAGTAGTAAATACTTTAGATTTTCCTGGCCACATGTGCTCTTTGTCACAGTCTTTGTTTTTCTTACACCACTTTAAAAATGTAGAAAGCGTTCTTGGCTCCTGGGTTGTACAGAAACAGGCCGAGGCCATGCTGTGCCAGTCTACCTTCCTGATACTGTCAGCTGGAACATAATGTCACCTTTTAAAATACCTTAATTTTTTTACCTATACTAACATGATCATATACCTCATATTAATGTAAAAATTTGTTATGTACATTCTTGTTTTTAATATACTAATTTTTCTTCTTTGCCGTTACCTTGGGGAAATCCCTCCCAGTCTAAGATTATAACTCTTGTTTTTGTAATGGATGCATAATACTCTAATAAACAAACTAGTTACTTCCAAGATACAATGGGGCTACAGCCTTTGGGTAAATGCCCCCATTCTGAAAGGGAGAAATCAGGCAAAACAAAGGGGCTGCAGGCCCCATGCCAATCTGAAACCCAGCAGGGCAGTCATTAAATCTCAGAGTTCGAAAATAATCTCCTTTGACTCCATGTCTCACATCCAGGCATGCTGATGCAAGGGATGAGCTCCCAAGGCCTTGGGCATCTCTGCCTCTGTGGCTCTGCAGGGTATAGCCCACTTGGCTATTTTCATGAGCTGGCGTTGAGTGCCTGCATCTTTTCCAGGCACGTGGTGGAAGCTGTTGGTGGGTCTGGGGTCTGGAGGACGGTGGCCCTCTTCTCACAGCTCCACTAGGCAATGCCTCAGTGGGGACTCTGGGGGCTCCAACCCCACATTTCCCTTCTCCATTGACCTAGTAGAGGTTCTCCATGAGGGCTCCACCCCTGCAGCAGACTTCTGCCTGGACATCCAGGTGTTTCTATAAATCCTCTGAAATCTGGGCAGAGGTTCCCAAGCCTCAGCTCTTGCCCTCTGCACACCACAGGCCCAACAGTACGTGGAAGCTGCCAAGGCTTGGGGTTTGCACCCTCTGAAGCAATGGCCTGAGCTATACCTTGGCCCCTTTTAGCCATGGCTGGAACTGGAGCAGCTACAATGCAGGGTGCCGTGTCCTTCAGCTGTAGAAAACAGCAGGGCCCTGGGCCTGAGCCACAGAACTATTTTTCCCTCCTAGGCCTTCAGGCCTGTGGTAGGAGGGACTGTCATGACTGGCTCTGAAATGCCCTGGAGGCATTTTCCCCATTTTCTTGGCTATTAACATTCAGCTCCTCTTTACTTAGGCACATTTCTGCAGCCTTGAATTTCTCCCCAGAAAATTGGTTTTTCTTTTCTACCACATGATCAGGCTGCAAATTTTTCAAATTTTTATGCTCTGCTTCTTTTTTAAATATAAGTTCCAGTTTCAGATAATCTCTTTGCCCATAAATATGAGCATATGCTGTTAGAAGCAGCCAGACCACATCTTGAATGCTTTGCTGCTTAGAAATTTATTCCACCAGATAACCTAAATCATCCCTATCAAGTTCAAAGTTCCACAGATCTTTGGAGCAGAGGCATAATGCTGCCAGTCTCTTTGCTAAAGCATAGCACCAATGTTGGGAAAATGTATAAATGCATTTACAAACCTAAATATATCTAAATATATCACCAGTTCCAGTCCCCAATAACTTCCTCATCTCCATCTGAGACCACCTCAGCCTGGACTTCACTGTCCATATCACTATCCGTATTTTGTTCAAAACCATGTAACAATTCTCTAGGAGATTCCAAACTTTCCCTCATCTTCCTGTCTTCTTCTGAACCCTCCAAATTATTACAACCTCTGCCCATTACCTGTTTCCAAAGTGACTTCCACGTTTTCAGGTATCTTTATAGCAATGCCCCACTTTTCTGGTACCAATTTTCTTTATTCGTCCATTCTCCCATTGCTGTAAAGAACTACCTGAGACCAGGTAATTTATAAAGAAAAGAGGTTTAATTGACTCATGGTTCCATAGGCTATACAGGAAGCATGGCTGGGGAGGCCTCAGGAAACTTATAAATATGGCAGATGGTGAAGGGGAAGGAGGCATGTTTTACATGGCAGAGAAAGAGGAAGAGAAAGAGGGCAGGAAGTGCTACATGCTTTCAAACAACCAGATCTCTTGAGAACTCTGTCACGAGACAGCACTTGGGGGATGGTGCTAAACCATTAGAAAGCACCCCCATGATCCAATCACCTCCCACCAGGCCTCAACTCCAACACTGGGAATTACAATTCAACATGAGATTTGGGTGGGGACGCAGAGCGAAACCATATCAGTGGTTAAGAAAGGAGTCAGCACAGCAGCTTAAATATTTGTGATCAAAACATTGTCACCACTATACCTTGTATTGTCTCTATCTAAAAGCGAAGTAAGAACGGAAGGTGATCTCAGCCTGGGTAACCTGAGCTGATGTTCTCGCTTAGCTTTTATTAAAGAAGAAGAAGAAGAAGACATAAACAAAGATTTTTTTTCTCTGAGTTCATTATAGCTAACTATTAAATTCAAAGGAATTACTTGTCTTTATGACAAATATAGCACCTTTGTTATTGAATTGATCAATTTGGGTTGCTTGAATCATTGACTTTCTCAACCTCTAAGTGCTAAAGCAGGATTGCTATGAAGATGTAATAAATTCTCAACCTTCTTACCTCAAATGATGTCTTCGGCATCTTTTGTCATGCTTAGTTTCTCCATCAAATAAAGTTCATTTATAAACTTAACACAATTTCTTATTACCATTCTACCATTGATATTGAAATAGAACTTAAATGTTGAGTTATTTAAATAAAGTAACAAGGTGTTTCGGTCTATACCATTGACTAAAGGAAATTAATGTTGTTACATGTGTGGTCTTTTTTAGAAGAGTGTGAAACAAAGTGAAATGACCTTTTATTTTTTTTCTTCCTCTATGTCCTTAACATTGCAAAACCCACTGCTCAGAGAGAAACTTTAATCTCATATATTTGAGAGATTTTTATATCATGAATTATGTACTAATTTGCATTGAAACAGTTGCTTTGTGAGAAATTGGGTTTTGACTAACAAGCTACTTTCATGTTCTCAAGCCACTACATCAGTCCCAAAAGACAGGACATATTAAACTGTATCTTTATGGATGTATATTGAGTGTTTTTTATAATAGTAAAACAAAACTACAAGGATTATGATTAACCCTAGCTGGAAGCTCAAACTTCTCACATATAAGCTATATACTTTATCTGATATGCCTCCTATAATATATCCCTTCATTTCATCATTATATGATAAAATATCATTATAATAACTGAAAGCTTCACTTTTGAGAAGGCAAAGACATCAGTAAATGTGCTTTTAAAGTACCAAGATGCATACCTACTGATATACCTTGAAGTGTTATCCCACAATCAGTGTGCTGCCCCAGAGCCTAGTGATACAGATTCATCAGTGTGGCCTTTTCTTTTTTCCTTTTTTAAAAGTTGGGATAGGGTAGGGCTTACGGGTAAGATTTTGTTCAAGAAAAATTACACCATTTTGGGTTTTTTTGAGACAGAGTCTTGCCATGCTGCCCAGGCTGGAGTTGCAGTGGCTGTTCACAGGTGCAATTATATTAATAGGTCACTGCATCCTCAGATGCCTGGGCTCAAGCATTTCTCCTGCCTCAGCTTTCTGAGTAGCTGGGTCTACAGGATTGCGTCACCATGCCTGGCTCACAGTTGTACCATTTAAAAAGTTACTTTAAAAATGAGAAAGACTCAATCCACAGGCCCTGCCTATGGGTCTTTTTGATCTTACATTTTTATTTCATCCACAGTAGATTCTTGTGACCTTTGCTTTTCTCATCAGCAGTATCACTCTGAATTGTCGCCCTACGTCTCCTATAGCCTTTCAGCTTTCCAGCAAAGTTGCCACCATCACCAGTTCCTTTCCCATTTAAAAAGCTACATTACATGCTCTTTTAGTTCTATGAGTGAGAGCAACTCAAACTATGATTTATTCATCAATGTTTATTGAGCAACTACTGTTCACTTGGCAGTGAAAGGAATGCAGTGCACAAAACAGTGTTTGTTTTCATGGATAATACATTCCAGTGTGGAGAGGCAGACAAACACAAAGAAATAAGGCAGAATTATGTTTGAGGGTAATATTCATGAAAAAACATCCCTTTTACTGCTTTTCTTCTGGATATTATAGAGACTTAATCTACTTCTAAGTGTTAGAAGAATGCATGTTATTAATTCAACCCTGTTTAACCAGTTGTCCTTAGGGAGGATATTTGTCACTAGTATATGAAGATCTGCTGTCTGCTTATAATCTGAGCTTTAATAACTAGGTAACTATTTCTACCCAAATATCCTGTCTTCAACCCTTTCTGGTGCCTCAAATTTCCTAAACACTAACATAATTTTCCAGTAAAATGGCACAAGCAAAAGTCAGTATTCATTGAGTTCTGTTCCTGGCTAATGAGCACCTCAGAGGACACCTACAGGTGCCATAATTTTTTTCTGATTTTTTTAGTTGAATTCTGTCACAGTCTTTCACATTTTGACCTACACCATGGCCGTTGATAATTGTGAAATATCTTTTGAAAAGAGTTAAAATCTGTAATGGCCTACAGGGACTTAGAAGAGCTTATTATTCTCTAAGCCCTCTTAGCGCAGCTGGCAGCGCGTTAGTCTCATAATCTGAAGAAGAGCTTATTATTCTCATGAGGATAAATAGCTCATTAGTGACAGGATATGTGATGCCTCAAACATAAAGTAAAAGTCTGTATTTACCTTCTTCAGCATATCATTTAACGCACACAGTACACTTACAAATGAACAACATTATCATGTTTATGTGCCAGACAAAAAAGAAAAACTTATTAGGACAAAAGGCGTTTGTCCATTTGCAACTATATTTTTCCAGTTTTAAGAACATCCTCTTTTCCCCTTCAGATCTCCTGGAAACCCATGATTAATCCATGATAACATGTTTATAGTTGTGTTGTTTTGTTTCGTTTGAGACAGGATCTCATTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTTAGCTCACTGCAACCTCTGCCTCATGGGTTCAAGTTATTCTCCTGCCTCAGCCTCCTCAGTAACGGGGACTACAGGTGTGCAACACCACGCCTGGCTAATTTTTGTACTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCACCCGACTTGGCCTCCCAAAGTGCTAGGGTTACAGGCATGAGCCACCATGCCCAGCCATGTTTATGGTTTTACTAAGCCTTTTGAACACAGCCATCATGTTCGATGTCCAGGTCGTGCTGCAAAGTCCTGATTTTGAGGCATCAGATATCCTGAATTATGTAGATGCTATTTGTATGTAGGTTAAATATCCCTTCTCCAAAATGCTTGGGACCAGAAGTGTTTTGTATTTCAAATATTTTCAGATTTTAGAGTATTTGCATTATACTTACCAGTTGAGCATCCCTAATCAGAAATCTGAAATACTCCAATGAGTATTTCCTTTGAACATCATGTAGAACATTAAAAAAGTTTTGGATTTTGGAGCATTTCACATTTCAGATTTTTGGATTGAGAATACTCAACCTGTAACTGGTATAGCCAAAGAGGAGATATTTTCTAAGTATTCTTAGAAATAGTGGCATGAATTTTCCTCTGGTTCATTCAAGTTTCATGTTATGACCTAAGTGTAAAATCTTCAAATCTCTTGAATAAAGCATTCACTCGTGCACATCTGAATTCTCTTTATCCTTATAG
Seq C2 exon
GAAGGAAGAATCAACAAAAGATGGAGAGTATTCAGGAAGTAACAGTAAGCTACTTTTCCCCCAAAGAGCTTTCCTCCCGTCAGACCTGGCAACAAAGTGCAGGTGGGTTAATCAGGTGTCAAGATTTCCTGAAAGTTTTTCAAGGGAAGAATTCTCAGTTGCAAGAACAAGGTAATTCCCTCGGCCAGGTTTGGGCAGGAATACCAGTTCAGATTTCTGAAGATAAGAACTATATATTCACTCATATAGGGAATGGCTCCAATTATATAAAAAGTCAAGGGTATCCATCTTGGAGGGCACATCATTCTTGGAGGAAAATGTATCTGAAAGAGTCACATAATTATCAGTGTAGATGTCAGCAAATTTCCATGAAAAATCATTTCTGTAAGTGTGACAGTGTCAGTTGGCTCTCACATCACAATGATAAACTGGAAGTACACAGAAAAGAAAACTACAGCTGCCATGACTGTGGAGAAGATATCATGAAGGTATCATTACTTAATCAGGAGTCAATTCAAACAGAGGAGAAGCCCTATCCATGTACTGGGTATAGAAAAGCCTTCAGTAATGACTCCAGCTCTGAGGTTCATCAGCAGTTCCACTTGGAAGGGAAGCCCTATACATACAGTTCATGTGGAAAGGGCTGTAATTATAGTTCACTTCTTCATATTCATCAAAATATTGAGAGAGAAGATGATATTGAGAATTCACATCTGAAATCCTATCAGAGAGTGCATACAGAGGAGAAACCATGCAAATGTGGTGAATATGGTGAGAACTTCAATCACTGTTCCCCTCTTAACACTTATGAACTTATCCACACAGGTGAGATGTCCTATAGGCACAACATTTATGAGAAAGCCTTCAGTCATAGCTTAGACCTTAATAGTATTTTTAGGGTCCATACTAGGGATGAACCCCATGAATATGAGGAAAATGAGAATGTCTTTAATCAGAGTTCATGTCTTCAAGTCCATCAAAAAATCCACACTGAAGAGAAACTATACACAGATATAGAGTATGGAAAGAGTTTCATTTGTAGTTCAAATCTTGACATTCAGCATAGGGTTCATATGGAAGAGAATTCATATAATTCTGAGGAGTGTGGTAATGGCTTCAGTCTGGCCTCACATTTTCAGGACCTTCAGATAGTCCACACTAAGGAACAACCATATAAACGCTATGTGTGTAGTAACAGCTTCAGCCATAATTTATATCTTCAAGGTCATCCAAAAATTCACATTGGAGAGAAACCACGTAAGGAGCATGGGAATGGCTTCAACTGGAGCTCAAAACTTAAAGATCATCAGAGAGTCCACACTGGACAGAAGCCATACAAATGCAATATATGCGGCAAAGGTTTCAATCATAGATCAGTTCTGAATGTTCATCAGAGAGTCCACACAGGAGAGAAACCTTATAAATGCGAGGAATGTGATAAGGGATTCAGTCGGAGTTCATATCTTCAAGCCCATCAGAGAGTCCACACTGGAGAAAAACCTTATAAATGTGAGGAATGTGGGAAGGGGTTCAGTCGAAATTCATACCTTCAAGGCCATCAGAGAGTTCACACTGGAGAAAAACCATACAAGTGTGAGGAGTGTGGGAAGGGCTTCAGTCGGAGTTCACACCTTCAAGGCCATCAGAGAGTCCACACTGGAGAAAAACCATTCAAATGTGAGGAATGTGGGAAGGGGTTCAGTTGGAGCTTTAATCTTCAAATTCATCAGAGGGTTCACACAGGAGAAAAACCCTATAAATGTGAAGAATGTGGTAAAGGCTTCAGTAAGGCCTCAACACTTTTGGCCCATCAGAGGGTCCACACGGGAGAGAAGCCATACCAATGTGATGAGTGTGGTAAGAGTTTCAGTCAGAGATCATACCTTCAGAGTCATCAGAGTGTCCATTCTGGAGAAAGACCATATATATGTGAGGTATGTGGAAAGGGCTTCAGTCAGAGAGCATATCTTCAAGGTCATCAGAGAGTCCACACTAGAGTGAAACCGTATAAATGTGAGATGTGTGGGAAGGGCTTTAGTCAGAGTTCGCGCCTTGAAGCACATCGGAGGGTTCACACAGGAGGGAAACCATACAAATGTGAGGTGTGTACAAAGGGTTTCAGTGAGAGTTCACGCCTTCAAGCACACCAAAGGGTTCATGTGGAAGGGAGACCCTATAAATGTGAACAGTGTGGTAAGGGTTTCAGTGGGTATTCAAGTCTTCAAGCCCATCACAGAGTCCACACAGGAGAGAAACCATACAAATGTGAGGTATGTGGAAAGGGCTTCAGTCAGAGATCAAATCTTCAGGCTCACCAGAGAGTCCACACAGGAGAGAAACCATACAAATGTGATGCATGTGGTAAGGGTTTCCGTTGGAGCTCAGGTCTTCTCATTCATCAAAGAGTCCATAGTAGTGATAAATTCTATAAAAGCGAAGACTATGGTAAGGACTACCCTTCATCAGAGAATCTACACAGAAATGAAGATTCTGTTTTGTTTTGAAGTCCTCAAATGGGAGCTGAAATTTTCCAGTCACTAGAGTTCTTTCAGTAGAAAAAGAATTTTTAAAAATTAAAATGTAATGTTGCTGCCCAACTTCAACATTCATAATGGCCAGGAGACCACACAACAGAGACATTTAATGAGAGGGGTTTCACGAGGGATTTTGTTAGAACTTTAACATCAGTCATTGCACAGGAGCTAAGGCTTATAAAATATGAGTATGGTCAGGAATTTAATAAAAGTACAGTGATGAGCATGCCTAAATCCATGTTCTCTAGAATGTAAGCTTGGTGAAAGAAGGGACTTTGTTCATTGCTAGTCTACAAAACTAGGACATTTCATAACGCAATGTAGGTGCTCAGTACTTTTTGCTAAATAACTAAAAGTATGTAAAGGTAAAAGGTTTGAAATTTTTAAGCGCATTTTTTAAAACTTAAAATGTATTTGGAGGAGAAATCCTGCAAGTAATCTTAATAAAATCATTTCAAGTAAATATTTGAAATGTAGAACAATAAGCATTATGATGATCTGAAATAACATTAATTTGATTGTAACCCTATTGGGGTTAGTTCCCACCCTTTGTTCCATCTTGAGCAGAGATGTGCTGCATTTCTTAACGTTTGGTCTCTATACATTATACCATCTGCTGAAGTTTAGCTTTGTGTGTGTGTATATGTACCCATGTGTGCACTTGAAATATCAGTACAAACTGATAAACAATGTTTCTGGTTAATGTTGCAAAAATGGAACACTGTATTTTACATAATTGATTTTCTACTCCTGCCCTGTGAATTAAGGCAGAGTTTTACTGTAATATTTGCAAGTATCCAAAATGGTTACTGATGACAAATACTTTTTAATAAATGTCAAAATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370:ENST00000354340:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains