Special

MmuALTD0016034-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24908938-24912971:+
Coord C1 exon
chr7:24908938-24909021
Coord A exon
chr7:24909022-24909033
Coord C2 exon
chr7:24909854-24912971
Length
12 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
GATTCTCTTCCTCCTCGTAGGAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
CACATCAGCCCTTCAAACCGGGTCTGATAGCCCAGCTGGAGAATGGAGAGCAGCTTTGGATGGTGGAGGCTGAAGCCCATGCAG
Seq A exon
GTGGGCTCTCGG
Seq C2 exon
GAAGAAGAAATGGACATGCTGTGGAGAACGCTGAAGACGTGGAAGTAAACTCCCTTTGTCCCGAGGACCTCTCCTTCTGTCAGACCTGGCCGTGGGGTGCATGCACATTACCCAGTGGTCAAGAGTTCATAAAAAGATGCCAAGGGAGTAATGGTGAATCTCAGAGCCAAGAAGCTTCCCCTCGCCTGGTGTGGGCAGGAATGCCCATGCAGATTTCTGAAGACGGGAATTACGGATTGCCTCCTGCACACGAAGACTCTGCTTCTATGAAAAATCAAGAGTTTCCTCCTCCAAGATCCCAGCAGTCTCAGGGGGAACCATATCTCGGCAGGCCATGTGTGACATGCCAGTGGAAAGGTCAGCAAACATCCATAAGAAATCACTTCTGTAGGTATGGCAGTGTCTGCTGGTCCCCCTACCACAGTGACAATGAGGAGCTATACAGCAAAGGAAAAAGCTATGGTTTCCATGACGACAGAGGAAAGACGGTGAAGGTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675-5-6,6-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.091 A=NA C2=0.241
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000005413





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000113031
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:44840774-44840775 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:52589765-52589851 
ALTERNATIVE
BtaALTD0000772-2/2
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTCTGATAGCCCAGCTGGAGA

				
R: 
CTTCAGCGTTCTCCACAGCAT

				
Band lengths: 
99-111

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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