HsaALTD1032820-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136218679-136219164:-
Coord C1 exon
chr9:136219030-136219164
Coord A exon
chr9:136218994-136219029
Coord C2 exon
chr9:136218679-136218808
Length
36 bp
Sequences
Splice sites
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
3' ss Seq
GCTGCCATATCCCGTCCTAGGTC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
Seq A exon
GCAAGTGTTCCTCTTGAACTGAAGCCCCCGGAGACA
Seq C2 exon
GTCGAAGCTGTACACGGTGGACCTGGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTGAAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-15-13,16-13,17-13-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTTGCCTGAAAAGCCA
R:
GGTAGTGTAGCCCTGACTCCA
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains