HsaINT0135824 @ hg38
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136218679-136219164:-
Coord C1 exon
chr9:136219030-136219164
Coord A exon
chr9:136218809-136219029
Coord C2 exon
chr9:136218679-136218808
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
3' ss Seq
GCTGCCATATCCCGTCCTAGGTC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
Seq A exon
GCAAGTGTTCCTCTTGAACTGAAGCCCCCGGAGACAGTGCGTGTAGACCGAAGGCTGCGTGCTTGCAGGGCGGGTTTACTCAGAAACCCACCCCAGCCAGTGAGGGCCGCTCAGGAGCCCTCCCAGGGGCCCTGGGAGTCCGTGGGGAGGAGCCAGGACAGGGAGACTTGCTGTGGAGGGAAAGGTTGGGCATTCCCTGACGCTGCCATATCCCGTCCTAG
Seq C2 exon
GTCGAAGCTGTACACGGTGGACCTGGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTGAAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661:ENST00000358701:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCCTTCTTTTCGTCTTA
R:
TTGGCCAAGACAGTCACAAAGT
Band lengths:
252-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development