BtaINT0121064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103755894-103756396:-
Coord C1 exon
chr11:103756262-103756396
Coord A exon
chr11:103756024-103756261
Coord C2 exon
chr11:103755894-103756023
Length
238 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CTGGCAGTGCTCGCTCCCAGGTC
3' ss Score
5.62
Exon sequences
Seq C1 exon
TGGGAAGCCCCTCCGGTCGTTTTTCTCCTCTTACCTGAGGTCACTGCCGGGAGTGAGGAAGAAACCAGGTTCCCTTCCTGGGAGACCCAGCAGAGACGAGAGCTCGGAAGCCGTGGTCTGGAGGGACTTTGACAG
Seq A exon
GCGAGTGTTCTTCCCCAGGAAGCTGCGGGAGCGGCCGTGGGTAGGGGTCCGGGCCCAGGGCTCCTCTGGGTGGCTCGTTCAGAAGCCCACCGCCCGCCTGCTGGCCTCTTGGGGATTCTCCCTGTTGTCTGCTGGTGGGGTGTCCTGGGGGCGTCCCTCTGGGTGGGGTTGGGCTCAGGAACAGGGGGTTTCTAGAGAGAGGGGTGGGTTCCCCTGACCTGGCAGTGCTCGCTCCCAG
Seq C2 exon
GTCAAAGCTGTACACGGCCGACCTGGAGTCAGGGCTGCACCACCTCCTGAGAGTGGAGCTTGCAGCACACAGGTCCCTGGCCGGCGCCGAGCTAAAGACGCTCAAGGACTTCATCACTGTCCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCTCCGGTCGTTTTT
R:
TTGGCCAGGACAGTGATGAAG
Band lengths:
260-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development