MmuINT0130228 @ mm10
Intron Retention
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26220630-26221043:-
Coord C1 exon
chr2:26220909-26221043
Coord A exon
chr2:26220760-26220908
Coord C2 exon
chr2:26220630-26220759
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TAACTCTCCACTTCTCTCAGGGC
3' ss Score
7.5
Exon sequences
Seq C1 exon
TGCAAAGCCTCTACGATCGTTTTTCTCCTCTCATTTAAAATCCTTACCAGATGTAAGGAAAAAGTCACTTTTCTTGCCTGAAAAGTCCAACAAAGAAGAAAAATCAGAGGTGGTGGTTTGGAAAGAATTTGACAG
Seq A exon
GCAAGTATGAGTGGTACTGGGTGCAGCAGAGAGGCTACCCTCTGGGGTGGCTTCCTCAGTCTACCTCCCACCTGGGGGCATGGTAGAAACAAGAGGGCCTTTGTACAGGAAGGCAGGAAGTATTTTTCCTAACTCTCCACTTCTCTCAG
Seq C2 exon
GGCCAAGCTGTATACTGCAGACCTGGAGTCGGGACTTCACTACCTGCTGAGAGTGGAGCTGGCTGCTCACAGGTCCCTGGCTGGAGCCCAGTTAAAGACATTCAGGGACTTCGTGACTGTCGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327:ENSMUST00000036187:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGCCTCTACGATCGTT
R:
CGACAGTCACGAAGTCCCTGA
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types