HsaINT0135824 @ hg19
Intron Retention
Gene
ENSG00000165661 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:30249]
Coordinates
chr9:139110525-139111010:-
Coord C1 exon
chr9:139110876-139111010
Coord A exon
chr9:139110655-139110875
Coord C2 exon
chr9:139110525-139110654
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
3' ss Seq
GCTGCCATATCCCGTCCTAGGTC
3' ss Score
6.66
Exon sequences
Seq C1 exon
CGTGAAGCCTCTGCGGGCCTTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCACACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAA
Seq A exon
GCAAGTGTTCCTCTTGAACTGAAGCCCCCGGAGACAGTGCGTGTAGACCGAAGGCTGCGTGCTTGCAGGGCGGGTTTACTCAGAAACCCACCCCAGCCAGTGAGGGCCGCTCAGGAGCCCTCCCAGGGGCCCTGGGAGTCCGTGGGGAGGAGCCAGGACAGGGAGACTTGCTGTGGAGGGAAAGGTTGGGCATTCCCTGACGCTGCCATATCCCGTCCTAG
Seq C2 exon
GTCGAAGCTGTACACGGTGGACCTGGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTGAAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-QSOX2:NM_181701:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCCTTCTTTTCGTCTTA
R:
TTGGCCAAGACAGTCACAAAGT
Band lengths:
252-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)