HsaALTD1033004-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165995 | CACNB2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr10:18400813-18402043:+
Coord C1 exon
chr10:18400813-18401100
Coord A exon
NA
Coord C2 exon
chr10:18401924-18402043
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
ATGTACATTTTCCTCTCCAGGGT
3' ss Score
10.24
Exon sequences
Seq C1 exon
GTGTGTTTTCAGCCCCTCCTGGAATGGGAAAATAAGAATCTCCCTGGATGGGAGTCCTCTGGGGCAGGGAGTGAAAGCCCCGGAGGCAGAAAGGGACGGAGAACAGGGGCTTGCCCAGAGCATGGATAGGAAAGGAGCTGGGGTTCTCCGGGGCTCAGCGCGCACTGAGAACCTGTGCCCGGGGCTGCAGCTGCGGACGATAAAGGCGCTGTCTGGCTCATGAAGGCCACCTGGATCAGGCTTCTGAAAAGAGCCAAGGGAGGAAGGCTGAAGAATTCTGATATCTGT
Seq A exon
NA
Seq C2 exon
GGTTCGGCAGACTCCTACACTAGCCGTCCATCCGATTCCGATGTATCTCTGGAGGAGGACCGGGAGGCAGTGCGCAGAGAAGCGGAGCGGCAGGCCCAGGCACAGTTGGAAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165995-12-21,13-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTTTTCAGCCCCTCCTG
R:
CCGGTCCTCCTCCAGAGATAC
Band lengths:
351-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains