RnoALTD0005001-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81922329-81923535:+
Coord C1 exon
chr17:81922329-81922595
Coord A exon
NA
Coord C2 exon
chr17:81923416-81923535
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
ATCTACGTTCTCCTCTGCAGGGT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GAAATGGGAAAATAAGATTCTCCTCAGACAGAAGTCTACTGGGGCTGGGAGTGAGAGCCTCAGAGGGAGAAGGGGACTGAGAAGAGGGGCTTCTTAGAGCATGGAGAGCAAAGGTACTAGGATTCTCCAGGGCTCAGCGCGCTCTGAGGCTCTGTACCCTGGGCTGCAGCTGCGGAAGATAAAGGCGCTATCCGGCTCATGAAGGCCACCTGGATCAGGCTTCTGAAAAGAGCCAAGGGAGGAAGGCTGAAGAATTCGGACATCTGT
Seq A exon
NA
Seq C2 exon
GGTTCGGCAGACTCCTACACCAGCCGCCCATCGGATTCAGATGTGTCTTTGGAAGAGGACCGGGAGGCAGTCCGTAGAGAAGCTGAGCGGCAGGCCCAGGCCCAGTTGGAAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-5-3,6-3,7-3,8-3-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGAGCCTCAGAGGGAG
R:
AGCTTCTCTACGGACTGCCTC
Band lengths:
303-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]