HsaALTD1033159-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123729615-123730923:-
Coord C1 exon
chr11:123730574-123730923
Coord A exon
chr11:123730487-123730573
Coord C2 exon
chr11:123729615-123729825
Length
87 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTGGAATTATTCCCAGGTG
3' ss Score
3.6
Exon sequences
Seq C1 exon
CTCTAGATGGTGTGAGACCACCCCAAAGCCAAGAAATGGCTACAGCCGTGGAACCAGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTGATGGTGAAACTGGAAGATGATTTCACCTGTCGGCCAGAGTCTGTCTTACAGAGGGATGACCCGGTGCTGGAAACCTCCCACCAGAACTTCCGACGCTTCCGCTACCAGGAGGCAGCAAGCCCTAGAGAAGCTCTCATCAGACTCCGAGAACTTTGTCACCAGTGGCTGAGACCAGAGAGGCGGACAAAGGAGCAGATCCTAGAGCTGCTTGTGCTGGAACAATTTCTTACCGTCCTACCTGGAGAACTACAGAGCTGG
Seq A exon
GTGCGGGGCCAACGGCCAGAAAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq C2 exon
GTGACTGTCCATGTTCACGGCCAGGAAGTCCTGTCAGAGGAGACGGTGCATTTAGGAGTGGAGCCTGAGTCACCTAATGAGCTGCAGGATCCTGTGCAAAGCTCGACCCCCGAGCAGTCTCCTGAGGAAACCACACAGAGCCCAGATCTGGGGGCACCGGCAGAGCAGCGTCCACACCAGGAAGAGGAGCTCCAGACCCTGCAGGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-16-14,18-14,19-14-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTCACCAGTGGCTGAG
R:
GGCTCCACTCCTAAATGCACC
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains