MmuALTD0016053-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40207208-40208515:+
Coord C1 exon
chr9:40207208-40207690
Coord A exon
chr9:40207691-40207694
Coord C2 exon
chr9:40208305-40208515
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTAAAATTGTTCCCAGGTA
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAGGAACCCCTTGAGCTACCCGGTCTAAAACACGTTATCGCCAGTGTGAGGGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCAACAGCCTTGGAGCCAGAGGACCAAGATCTTTGGGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACGTGCGGGCCAGAATCCGCCTTGGAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAACTTCCGACGCTTTCGATACCAGGAAGCATCAAGCCCTCGAGAAGCTCTCATCAGACTTCGAGAGCTTTGTCATCAGTGGCTGAGGCCAGAGAGGAGAACTAAGGAGCAGATTCTTGAGCTGCTCGTGTTGGAGCAGTTCCTCACTGTCCTGCCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAGCGGCCCGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCG
Seq A exon
GTGG
Seq C2 exon
GTAACCGTCCATGTTCAGGGCCAGGAAGTCCTGTCAGAGGAGACCCTACACCTAGGGCTGGAGCCGGAGTCCTCCAGTGAGCAACAAGATCCAACACAGACCTTGACCACTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCCCAGATCTGGGGACACAGGAACAGGAGACCTTGCAGCATGACGAGGAGCACCTGCCCCTGCCGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-8-6,9-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=70.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGGGTTTGCAGAAAC
R:
GGTGTAGGGTCTCCTCTGACA
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types