MmuINT0178721 @ mm10
Intron Retention
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40207199-40208515:+
Coord C1 exon
chr9:40207199-40207694
Coord A exon
chr9:40207695-40208304
Coord C2 exon
chr9:40208305-40208515
Length
610 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTAAAATTGTTCCCAGGTA
3' ss Score
4.04
Exon sequences
Seq C1 exon
GTCCCTTAGGAGGAACCCCTTGAGCTACCCGGTCTAAAACACGTTATCGCCAGTGTGAGGGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCAACAGCCTTGGAGCCAGAGGACCAAGATCTTTGGGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACGTGCGGGCCAGAATCCGCCTTGGAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAACTTCCGACGCTTTCGATACCAGGAAGCATCAAGCCCTCGAGAAGCTCTCATCAGACTTCGAGAGCTTTGTCATCAGTGGCTGAGGCCAGAGAGGAGAACTAAGGAGCAGATTCTTGAGCTGCTCGTGTTGGAGCAGTTCCTCACTGTCCTGCCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAGCGGCCCGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq A exon
GTGAGGAGGGGGAGTCCTGATCTGTGTGATGTGGAGGGGGACTGTTCCTCAAGGCTGGATCTGGGGAGAGTATGAGGGTCCCATAAATTATCCTTTAAATTTTACTGGTTCTGCTTTTGGGTTTCATCTAGAACCATGAGCCCGGTGGGGCCGGGATGGATGTGTGCGAGTGTGACTTTCTAGGCTTTGAATCACCTGCCTGTGCCACCTAAAGATTGGGTTTTAAATTTCTTTGGATGTTGAACCTTGGGGTCCTTAGAAAGCAACTATTCTGACTTCCTCTAGTTTCACCTAGACCCTTAATCCCAAGACCCCTTTCCTAGGATGGTAATCTGAGAAAACAAACAGTAAGCAGCCCTGAAGGATAGATGGAAACCTCAGGGCCCCAGGTGATGAGATTAAAGGTTGAAAGAAGGGGGAAATTAGAAGAGTCCTAGGGTGTCCCCTGCCTTGTCTTTGTAAAGATAACTGGTTCTTCGTGTGCCTTTGCAGCTTGAGTTTCCCCTCCTCATCTCGTTCCCTTTGTGAGTGTTCCTCCCAAAGTACCCCTGATGACAAGCAGGAATTTTCTCCTGACTCCATCATGACTGGAAGTTAAAATTGTTCCCAG
Seq C2 exon
GTAACCGTCCATGTTCAGGGCCAGGAAGTCCTGTCAGAGGAGACCCTACACCTAGGGCTGGAGCCGGAGTCCTCCAGTGAGCAACAAGATCCAACACAGACCTTGACCACTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCCCAGATCTGGGGACACAGGAACAGGAGACCTTGCAGCATGACGAGGAGCACCTGCCCCTGCCGGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602:ENSMUST00000026693:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCTCGAGAAGCTCTCAT
R:
GCTCAGTGGTCAAGGTCTGTG
Band lengths:
344-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types