BtaINT0165021 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34852463-34853735:-
Coord C1 exon
chr15:34853334-34853735
Coord A exon
chr15:34852674-34853333
Coord C2 exon
chr15:34852463-34852673
Length
660 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTGGAATTGTTCCCAGGTG
3' ss Score
4.53
Exon sequences
Seq C1 exon
ATGGCTACTGCCTTGGAGCCGGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTCATGGTGAAACTGGAAGATGACTTCCCCTGTCGGCCGGAGTCTGTCTCACAGAGGGATGACCCTGTGCTTGAGACGTCACACCAGAACTTCCGGCGCTTCCGCTACCAGGAAGCAGCCAGCCCGCGGGAAGCCCTCATCCGACTCCGAGAACTGTGTCGTCAGTGGCTGAGGCCAGAGCGCAGGACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTCACTGTCCTGCCCGGAGAGCTGCAGAGCTGGGTGCGGGGCCAGCGGCCCGAGAGCGGCGAGGAGGCCGTGACCCTGGTGGAGGGTTTGCAGAAACAGCCCAGGAGACCAAGGCGGTGG
Seq A exon
GTGAGGAGGGGGAGTCCTGATCTGTGTGATGCGGAGGGGGTCTACCGGCTGGAAGGATGGCTAGGTCTCACAGAAATCACCTCGTAAACTTAACTGACTCTGCCCTTGGGTTGCACCTAGATCCATATGCCCCATGGGACAGTGGAGTGTGTGTTTGTGTGTGTGTGTGTGTGTGACTTCCTGGTTCTTGAAACACCTGCCTGAGGAGGCCATCTTTGCGGCTTCATCACCAAGGGTGATACCGCTTTCCTTTTCCCTTTCGGTATTGAACCTCATTTTCCTGGTGGGGGTGGGGGTGTGGGTAGAGAATTCTTTGACTTCCTCAGAGGTTCTCAGCCCCTCAGTCAGAGAGGCCTCTCCTAAGACAGCAGAGGGTGATGGGAAGGATGGCACCTCAGAGCCCCAGTGATGGGCAGGGTTGAGGGAAAAAAGAAAACAGGGCGGTATCTGAATGTCCCGCGCCCCCGTCCCCGCCCCCGCCCGTTGTTCTGGCGACAGTAACCTGAGCTTCCCCTCGCACACACCAGGGAGACTGGACTTCCCCCCTTTACCTGGGCCCCCCTGGGAGTTTTCTGATGGCAGCTTCTTCTGATGTGAGATCTGTGACACCCAGGACTTTATCCTGACTCAGCGGTGACTGGAAGTTGGAATTGTTCCCAG
Seq C2 exon
GTGACTGTCCATGTTCATGGCCAGGAAGTCCTGTCCGAGGAGACAGTGCCTCCAGGAGCAGAGCCCGGGTCACCTAGTGAGCTGCAGGACCCTGCACAGACCTTGACCCCCGAGGAGCTCCGTGAGGAGACCACACAGAGCCCAGATCTGGGGGCGTCAGAAGAGCAGACCCTGTGCCAGGAGTCGGAGCTCCAGCCCCTGCAGGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684:ENSBTAT00000022184:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAACTGTGTCGTCAGTGG
R:
ATCTGGGCTCTGTGTGGTCTC
Band lengths:
348-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development