RnoINT0167842 @ rn6
Intron Retention
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44061894-44063202:+
Coord C1 exon
chr8:44061894-44062393
Coord A exon
chr8:44062394-44062991
Coord C2 exon
chr8:44062992-44063202
Length
598 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTAAAATTATTCCCAGGTA
3' ss Score
3.11
Exon sequences
Seq C1 exon
CCCTTAGGAGGAACCCCTTGAGGTACCCGGTCTAGAATACATTAATGCCCTTGTGAGTGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCGACAGCCTTGGAGCTAGAGGACCAAGATCTTTGGGAAGAAGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACCTGCGGGCCAGAATCTGCCTTGCAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAATTTCCGATGCTTTCGCTACCAGGAAGCATCTAGCCCTCGAGAAGCCCTCATCAGACTTCGAGAGCTTTGTCATCAATGGTTGAGGCCAGAGAGGAGAACAAAGGAGCAGATCCTTGAGCTGCTTGTGCTAGAACAGTTCCTCACTGTCCTACCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAACGGCCAGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq A exon
GTGAGGAGGGGGAGTCCTGATCTGTGTGATGTGGAGGGGGCCTGTTTCCTGAAAGGCTGGATCTGGGGAGAGTATGAGGGTCCCGTAAATTATCCTTTAAGTTTCATTGGTTCTGCTTTCGGGTTCCGTCTAGATCCATGAGCCCTGTGGGGTAGTGGTGGATGTGTGTGAGTGACTTTCTAGGATTGAACCACCTGCCGTGCCACCTAAAGATTGAGTTTTAAACTTCTCTGGATGTTGAACCTTGGAGTTCATAGAGAGCAACTATTATGACTTCCTCAAAACCCTTAATCCCAAGACCCCTTTCCTAAGAGAGTAATCTGGGGAAGCCCTGAAGGATGGATAGAAACCTCAGGGCCCCAGGTGACTGGATTAAAGGTTGAGAGAAGTAAAAAAAAAAAAAAAAAAAAAGTAGGGCCGTCCTAGTGAGTCCCTGCCTTGTCTTCGTGAAATTAATTGGTTCTTCATGTGCCTCTGCCACTTGAGTTTCCCCTCCTCATCTGGTTCCCTCTGTGAGTGTTCCTCCCAAAATACCCCTGATGACAAGCAGCAATTTTCTCCTGACTCCATCGTGACTAGAAGTTAAAATTATTCCCAG
Seq C2 exon
GTAACCGTCCATGTTCAAGGCCAGGAAGTTCTGTCAGAGGAGACACTACACCTAGGGGTGGAGCCAGAGTCCTCCAATGAGCAGCAAGAGCCAACACAGACCTTGACCGCTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCACAGATCTGGGGACACTGGAACAGGAGAGCTTGCAGCATGAAGGGGAGCGCCTGCCCCTGCTGGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932:ENSRNOT00000084416:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.831
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCGCTACCAGGAAGCAT
R:
AAGGTCTGTGTTGGCTCTTGC
Band lengths:
355-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]