HsaINT0186417 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123600323-123601693:-
Coord C1 exon
chr11:123601195-123601693
Coord A exon
chr11:123600534-123601194
Coord C2 exon
chr11:123600323-123600533
Length
661 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GAAGTTGGAATTATTCCCAGGTG
3' ss Score
3.6
Exon sequences
Seq C1 exon
GGCCCTTGGAAGAAAATCCTCGCTGTGTCCAGGCTGAGGCGGGGGGCTAATGACAGTGTGAGCTCTAGATGGTGTGAGACCACCCCAAAGCCAAGAAATGGCTACAGCCGTGGAACCAGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTGATGGTGAAACTGGAAGATGATTTCACCTGTCGGCCAGAGTCTGTCTTACAGAGGGATGACCCGGTGCTGGAAACCTCCCACCAGAACTTCCGACGCTTCCGCTACCAGGAGGCAGCAAGCCCTAGAGAAGCTCTCATCAGACTCCGAGAACTTTGTCACCAGTGGCTGAGACCAGAGAGGCGGACAAAGGAGCAGATCCTAGAGCTGCTTGTGCTGGAACAATTTCTTACCGTCCTACCTGGAGAACTACAGAGCTGGGTGCGGGGCCAACGGCCAGAAAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq A exon
GTGAGGAGGGGGAGTCCTGATCTGTGTGATGTGGAGGGGGACTATTTGCTGGAAGGCTGGATTTGCGGGGAGAGCTTGCAGGATCCCCATAAATTATTAGTGGGCTCTGCCCTTGGGTTGCTCATATACCATGAGCCCCATGGATTAGGGGGATGTGTGTGTATGAATGTGACTTTCTGGATATTGGAACACCTGTATAGGGACCATCTGAGGGGTCTCAGCCACCAAAGGGTCATGGCTTTGGTTTTCCCTTCTTTGAATGTTGAGCCGTGGGTTCCTGGAGAGGAGAATTTTGTGACTTCCTCGAAGGTTCTCATAGATCCCCAGTCACAGATCCCCCTTCCTGGCTGGTCAGCTAGGGAAGCAGGCAGCAAGGAGAGCTGCAGGTGGGACAGGTGGAGATGGGAAGGAACCTTGGGTGACAGGGGCCCAGGCTGGGGGTGGTGAGAGAGCAGTGCAGGCCTGCGCATCCCCTGCCTTGTCCTGGGGAGGATAACCTTCAGCTCCTCCTTGCCTGCTCCATTGAAACTGGAGTTTCCCCTCCTTGTCTGGGTCCCTCTGGGAGTGTTTTCTCTAGGCATCTTCTCCTAAAATAAGCTCCCGTGACAACCAAGAACTTCCTCCTGACTCCATGGTGACTGGAAGTTGGAATTATTCCCAG
Seq C2 exon
GTGACTGTCCATGTTCACGGCCAGGAAGTCCTGTCAGAGGAGACGGTGCATTTAGGAGTGGAGCCTGAGTCACCTAATGAGCTGCAGGATCCTGTGCAAAGCTCGACCCCCGAGCAGTCTCCTGAGGAAACCACACAGAGCCCAGATCTGGGGGCACCGGCAGAGCAGCGTCCACACCAGGAAGAGGAGCTCCAGACCCTGCAGGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACCTCCCACCAGAACT
R:
GGCTCCACTCCTAAATGCACC
Band lengths:
343-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)