BtaEX0041140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34852020-34853735:-
Coord C1 exon
chr15:34853334-34853735
Coord A exon
chr15:34852463-34852673
Coord C2 exon
chr15:34852020-34852108
Length
211 bp
Sequences
Splice sites
3' ss Seq
GAAGTTGGAATTGTTCCCAGGTG
3' ss Score
4.53
5' ss Seq
GCGGTGGGA
5' ss Score
3.1
Exon sequences
Seq C1 exon
ATGGCTACTGCCTTGGAGCCGGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTCATGGTGAAACTGGAAGATGACTTCCCCTGTCGGCCGGAGTCTGTCTCACAGAGGGATGACCCTGTGCTTGAGACGTCACACCAGAACTTCCGGCGCTTCCGCTACCAGGAAGCAGCCAGCCCGCGGGAAGCCCTCATCCGACTCCGAGAACTGTGTCGTCAGTGGCTGAGGCCAGAGCGCAGGACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTCACTGTCCTGCCCGGAGAGCTGCAGAGCTGGGTGCGGGGCCAGCGGCCCGAGAGCGGCGAGGAGGCCGTGACCCTGGTGGAGGGTTTGCAGAAACAGCCCAGGAGACCAAGGCGGTGG
Seq A exon
GTGACTGTCCATGTTCATGGCCAGGAAGTCCTGTCCGAGGAGACAGTGCCTCCAGGAGCAGAGCCCGGGTCACCTAGTGAGCTGCAGGACCCTGCACAGACCTTGACCCCCGAGGAGCTCCGTGAGGAGACCACACAGAGCCCAGATCTGGGGGCGTCAGAAGAGCAGACCCTGTGCCAGGAGTCGGAGCTCCAGCCCCTGCAGGAGAGCG
Seq C2 exon
AGGTTCCAGTGCTCCAGAACCCAGCCCTTCCTGAAGAGAGGAACTCTGGAAACTCCGAGATGGTCGCCCTTCTCACTGCTCTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.859 C2=0.767
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCCGACTCCGAGAACT
R:
ATAGAGCAGTGAGAAGGGCGA
Band lengths:
298-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development