RnoEX0101101 @ rn6
Exon Skipping
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44061892-44063586:+
Coord C1 exon
chr8:44061892-44062393
Coord A exon
chr8:44062992-44063202
Coord C2 exon
chr8:44063498-44063586
Length
211 bp
Sequences
Splice sites
3' ss Seq
GAAGTTAAAATTATTCCCAGGTA
3' ss Score
3.11
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
CCCTTAGGAGGAACCCCTTGAGGTACCCGGTCTAGAATACATTAATGCCCTTGTGAGTGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCGACAGCCTTGGAGCTAGAGGACCAAGATCTTTGGGAAGAAGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACCTGCGGGCCAGAATCTGCCTTGCAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAATTTCCGATGCTTTCGCTACCAGGAAGCATCTAGCCCTCGAGAAGCCCTCATCAGACTTCGAGAGCTTTGTCATCAATGGTTGAGGCCAGAGAGGAGAACAAAGGAGCAGATCCTTGAGCTGCTTGTGCTAGAACAGTTCCTCACTGTCCTACCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAACGGCCAGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq A exon
GTAACCGTCCATGTTCAAGGCCAGGAAGTTCTGTCAGAGGAGACACTACACCTAGGGGTGGAGCCAGAGTCCTCCAATGAGCAGCAAGAGCCAACACAGACCTTGACCGCTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCACAGATCTGGGGACACTGGAACAGGAGAGCTTGCAGCATGAAGGGGAGCGCCTGCCCCTGCTGGAAAGTG
Seq C2 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932-'10-12,'10-11,12-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.831 C2=0.800
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCGCTACCAGGAAGCAT
R:
ACCCTTGTTCTGTGGGAAGGT
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]