MmuEX6065088 @ mm10
Exon Skipping
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40207199-40208966:+
Coord C1 exon
chr9:40207199-40207694
Coord A exon
chr9:40208305-40208515
Coord C2 exon
chr9:40208878-40208966
Length
211 bp
Sequences
Splice sites
3' ss Seq
GAAGTTAAAATTGTTCCCAGGTA
3' ss Score
4.04
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GTCCCTTAGGAGGAACCCCTTGAGCTACCCGGTCTAAAACACGTTATCGCCAGTGTGAGGGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCAACAGCCTTGGAGCCAGAGGACCAAGATCTTTGGGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACGTGCGGGCCAGAATCCGCCTTGGAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAACTTCCGACGCTTTCGATACCAGGAAGCATCAAGCCCTCGAGAAGCTCTCATCAGACTTCGAGAGCTTTGTCATCAGTGGCTGAGGCCAGAGAGGAGAACTAAGGAGCAGATTCTTGAGCTGCTCGTGTTGGAGCAGTTCCTCACTGTCCTGCCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAGCGGCCCGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
Seq A exon
GTAACCGTCCATGTTCAGGGCCAGGAAGTCCTGTCAGAGGAGACCCTACACCTAGGGCTGGAGCCGGAGTCCTCCAGTGAGCAACAAGATCCAACACAGACCTTGACCACTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCCCAGATCTGGGGACACAGGAACAGGAGACCTTGCAGCATGACGAGGAGCACCTGCCCCTGCCGGAATGTG
Seq C2 exon
AGGTTCCAGTGTCCCAGGATGTAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-'6-11,'6-6,11-11=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.846 C2=0.800
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAACTTCCGACGCTTTC
R:
TGGGAAGGTCTACATCCTGGG
Band lengths:
299-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types