BtaINT0165022 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34852020-34852673:-
Coord C1 exon
chr15:34852463-34852673
Coord A exon
chr15:34852109-34852462
Coord C2 exon
chr15:34852020-34852108
Length
354 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGA
5' ss Score
3.1
3' ss Seq
TCCCCTTCCTGTCTTCTTAGAGG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTGACTGTCCATGTTCATGGCCAGGAAGTCCTGTCCGAGGAGACAGTGCCTCCAGGAGCAGAGCCCGGGTCACCTAGTGAGCTGCAGGACCCTGCACAGACCTTGACCCCCGAGGAGCTCCGTGAGGAGACCACACAGAGCCCAGATCTGGGGGCGTCAGAAGAGCAGACCCTGTGCCAGGAGTCGGAGCTCCAGCCCCTGCAGGAGAGCG
Seq A exon
GTGGGAAGCCCACAGGAAGCGGGGGTCATGGCTGAGTGAGGGGTGGGGGTGTTGCTCTCAGATGGGGAGGCTGGTAGAGCATGAGTGGAGGAAGCCACAGGATGCAGGGTGTTGAAAGGAGGCAGTACTAGCCATAGTCTTGCGAGAGCAGGGCCACTGTGGCCAGCAGAACTCTTGGTTATTCCCCTGGCATTCCCATAACGTTATAGGTAGCAGCTTTGGGGTGACTCAGACTGCCCTTAGGCCAGTGTCTCGACCCCACCCTTCCCACCAGAGACCATGGGGAATGCTCAGCTCTTTGCTGGTTATAGGGCTGCCTTGCACGTGACTGATCTCCCCTTCCTGTCTTCTTAG
Seq C2 exon
AGGTTCCAGTGCTCCAGAACCCAGCCCTTCCTGAAGAGAGGAACTCTGGAAACTCCGAGATGGTCGCCCTTCTCACTGCTCTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684:ENSBTAT00000022184:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTCCATGTTCATGGCC
R:
ATAGAGCAGTGAGAAGGGCGA
Band lengths:
294-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development