HsaINT0186418 @ hg38
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123729126-123729825:-
Coord C1 exon
chr11:123729615-123729825
Coord A exon
chr11:123729215-123729614
Coord C2 exon
chr11:123729126-123729214
Length
400 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGA
5' ss Score
3.1
3' ss Seq
TTGCCTTCTTTTCTTCATAGAGG
3' ss Score
8.97
Exon sequences
Seq C1 exon
GTGACTGTCCATGTTCACGGCCAGGAAGTCCTGTCAGAGGAGACGGTGCATTTAGGAGTGGAGCCTGAGTCACCTAATGAGCTGCAGGATCCTGTGCAAAGCTCGACCCCCGAGCAGTCTCCTGAGGAAACCACACAGAGCCCAGATCTGGGGGCACCGGCAGAGCAGCGTCCACACCAGGAAGAGGAGCTCCAGACCCTGCAGGAGAGCG
Seq A exon
GTGGGAAGCATCAGCAGAAAGGGGGGATTGTGGCAGAAGGCAGGCAAGGAGGGGGACATTTCTCGGACATTTCTCCTATACCAAGGAAGCTGGGTAGATAGACTGTATGGAAAGACATCACAGAATCCAGGATGTCAAGAGGAGACAGTACCGCCAGCTAGAGTCCCCCATAAACAGGGCCAAGCTTAGACAGCAGATTGTTGCTTGTTCTCTTGGCATTCTGATAGTCTCATAGGTGATGGGATTGGGATATGGGAGCTACCCTTAGGCCAGTTTCTTGGTTCCCATAATAGAAAGGATAGGGCCACCTTCCTACCAAAGATGGTGGGGGATGCCCAGATTTTTGCCCATTATTGGGGCATGCTGCATATTACTGATCTTTGCCTTCTTTTCTTCATAG
Seq C2 exon
AGGTCCCAGTGCCCGAGGACCCAGACCTTCCTGCAGAGAGGAGCTCTGGAGACTCAGAGATGGTTGCTCTTCTTACTGCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261:ENST00000336139:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGTCCATGTTCACGGC
R:
ACAGAGCAGTAAGAAGAGCAACC
Band lengths:
295-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains