RnoINT0167843 @ rn6
Intron Retention
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44062992-44063586:+
Coord C1 exon
chr8:44062992-44063202
Coord A exon
chr8:44063203-44063497
Coord C2 exon
chr8:44063498-44063586
Length
295 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
3' ss Seq
TATCTCCTTTTGTTTCTTAGAGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTAACCGTCCATGTTCAAGGCCAGGAAGTTCTGTCAGAGGAGACACTACACCTAGGGGTGGAGCCAGAGTCCTCCAATGAGCAGCAAGAGCCAACACAGACCTTGACCGCTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCACAGATCTGGGGACACTGGAACAGGAGAGCTTGCAGCATGAAGGGGAGCGCCTGCCCCTGCTGGAAAGTG
Seq A exon
GTAGGAAGAAGCCTTAGCAGGAAGCGGAAATCTTGGCAAAGTGAGGAAGAAAGCACAGAATATTGATTCTTTCTGTTCTCAGAGAGAACCAGCTAGAACCTGCCTGTACTTCGGGCCAGGTTTAAGTAGTTATTCTTGAGAGCATTCCAGTGGGGTTGTGGGTAGCTAAGATAATTCTGTCCACCATAGATCAGTTTCTTGATTCTCTTAGCAGAGAAGTTAAAGCCACTTTTTTGTTCACTCTAGTAGAGGAAGCTCAGCTTCTTGCACTTTACTATCTCCTTTTGTTTCTTAG
Seq C2 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932:ENSRNOT00000084416:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGTCCATGTTCAAGGCC
R:
AGAGCAGTGAGAAGAGCAACC
Band lengths:
292-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]