HsaALTD1033162-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123740117-123740536:-
Coord C1 exon
chr11:123740417-123740536
Coord A exon
chr11:123740393-123740416
Coord C2 exon
chr11:123740117-123740232
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTCACCCTTTCTCCTCCAGCTA
3' ss Score
10.94
Exon sequences
Seq C1 exon
GTGACACCCAGGGCAGCTACACTCAGAAGCCACAAGGAATGCTAGTGGAGCCCCTCATCCCTCCCAGCTTCTCTTCCAAGCTGCCCCGTGGGGCTTGATCCAGGAAGCTACTTCAGAAAG
Seq A exon
GTTGTGGGATAGCCTTGGGAGGAG
Seq C2 exon
CTATACCCTTTTTGTACTCTGTGTATATACTATATTGCAGTAGACAATCATTCCAAGGGTACAACAAGGTTTACCACAATGTGAGGGACTCAGCCATTGCAAATTGTACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-3-1,4-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTGATCCAGGAAGCTAC
R:
TCCCTCACATTGTGGTAAACCT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains