HsaINT0186416 @ hg38
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123730487-123740536:-
Coord C1 exon
chr11:123740393-123740536
Coord A exon
chr11:123730986-123740392
Coord C2 exon
chr11:123730487-123730985
Length
9407 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
GTCTTTACTTCTCTATCCAGGGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTGACACCCAGGGCAGCTACACTCAGAAGCCACAAGGAATGCTAGTGGAGCCCCTCATCCCTCCCAGCTTCTCTTCCAAGCTGCCCCGTGGGGCTTGATCCAGGAAGCTACTTCAGAAAGGTTGTGGGATAGCCTTGGGAGGAG
Seq A exon
GTTTGTTGGTGGGAAGCGTGTGAACGCGGAGCAGTCTGGGATAACTTTCTGCTGTTACTATCTAGCATAAGAGGGTGGGCAGGGTTGGAGAGAGGACAGGAATTTTTCCTCCTAGGACCAAACGCCTGGGATTCATAATCTTTCACCCTTTCTCCTCCAGCTATACCCTTTTTGTACTCTGTGTATATACTATATTGCAGTAGACAATCATTCCAAGGGTACAACAAGGTTTACCACAATGTGAGGGACTCAGCCATTGCAAATTGTACAGATGAGGTAAGTTACAGGTTTACATTTTTTTTTCCCAGTAAATTTGGCACAGATTTAAAATGTGAAACAGTTCTATACCCCTTGTTTTTGCTGTTCTCTCACCAGCAAACCCTTTAGTTTGGCCAGCAATGGCTTTCTGCATGAACTTCAGATTTACTTCATTTGCTAGGTGGTGGTTCTCAAACTTACTATAAGCACCTGAAGGGCTAGTTAAACGCATATTGCTGGGGCCCACCCCTAGAGTTTCTGGTAATAGGTCTGTGCTGGGGCTTGAGAATTTGTACTTCTAACAAGGCTCAGGTACTGATGCTGCAGATCTGGGTTCTTCACTTTGAGAACAACTACCTTTTGGCCAAATGTGATATATGTATTGCAGTAGGTTGAGGTTCAGAATACCTTTGTTTGAGTACTTCTGTGTTGGAAACTAGTAATCTGATCTTTTATAGATAATCACTTAGGTCTGAATATTTTGTTCGCAAAATTAAGAAAGCGTACTTAAAACAACTGAATGCTATATGCCAAATTTGAGGTGAAATATTGATAAGTTCTTCCCCTTGATTTTCTTAATTCTCTTGATAGGGGCTTCACGTTTTGATCAAAATATTACACCTGTATTCTGGGCTTTTGCTGTGAATTCCTAGTATTGCTAAAATTCTGCAATTTCTTAACTACCTGTTAAGTTCCTCAAGGTCAGAGCTTCTGCTTTTTTTATCTTTCTTTGCCCAGCACCTTGAATAGTGTGGGACACGTAATTGACGCTCAGTAGATATTTGTGTATTGAACTCCATCCCTTGTCCTCCTCCCCTCTTGATGTTTTTCTCTACTGGCCTTATGCTACACAGTAAAGCAGGGCATGATTATGCCACTTGATTACCCCCAAGAGATTGGAATAAATGCTTATGCCAAATTCCTACAGCTATCCCTGTGAATGGTTTATTACCCAGGAGCCCTGACACTGGCTGATTTCTGAATTTTCAGTGCTTCTGTAATATATACTAGTTGGGGGAGGAGAAATAGAAAGCTTAAACTCAATGTGCGTTTATTGAATACCTTTTCTACTAAGGGCTCCACAAAGTGGTAGGCACTGGGAATATAAAAATGAATAAGGAGACCCTTGCTCTCGAGGGCAGGGCCCACAGTGGGGAGACAGACGTTAAGCCATGCCCACGACAAGAATGACTTCTGAGATTCCTTCTCTGGATCATGATTTAGTCTTCAGTGGAAACCTGGTACTCCTCAGATTCCTCTGGTTCAACAGGCGGGGATCCCATCCCTTATCATCTCCTCAAATGCTAAAGGACCCTTGAGCAAAGCCAGGAGGAAGTCATCTAGACGTGAAACAGGGAGTATCCACACAGGCTGTGTTAATGACAAAGCTAAAAACATAGTAAATGACTTTTGAATTTACTGCTGTTATGAATTATCTATAGCAACACCTCCGGTCAGCTCTGTTATATATGTTATTGCGTTATTTCCCATTAAATGATGGTTCCTCTGACTATCTGATTGGCATTGACTATGTTTGTTGTAGAGATTGCATACATCTAGTTTAACTCTGGCTGTCAAATGAGAGCAGTTACTCTTATCAGGATGGGTGTCAGGTTTGATGTCCCCTCCTTTTCCTGCTTCAGGTTAATTTGTCATGTTCTGTTTTAAACTGAGACATATAGCTTGACCTCCTTTATTTAGGCCATTAACTGCTCTGGGGTAGTTTTCCTGAAGGTTAAAAAGCCTAGCTTCATGATGGAGGTTAACCAACATGACCATGATGGCCAGGTGTATAAATCTGGCCTCTTAAAAATCTGTATTTGAGGCTGGGTGCAGTGGCTCACACCTGTAATCCTAACACTTTGGGAGGCCAAAGCTGGCAGATCACTTGAGCCCAGGTATTTGAGACCAGCCTGGGCAACATGGCAAGACCCCTTCTCTATAAAAAATTTAAACATTAGCTGGGCATGGTGGCATGTGCTGTAGTCCCAGATACTTAGGAGGCTGGGGTGGGAGGATGGCCTGAACCTGGGAGGCAGAGATTGCAGTGAGTTGTGATCTTGCCACTGCACTCCAGTCTTAGCAACAGAGTAAACCCTATCTCAAAACTTAAAAATCTGTGTTTGGCCCCTAGCCGTCCTCAGCTCTTGAGTAAATCTCAGCATCCTAGGCTGTTACATTATGGCCCAAATATTCAATAGAGATGCTGTATATCCTTGTTCCTCTCAAAACCCCTCCTCATCACCATCAAAAAGCTGGTTCAGTTCTCTACCTTTAGATAAAGAATCATCCCAAGACTCAACATGAGCTGCCGTGACTTGTCCAAGATGACACCTCTTTACAATGTAGAGCAGTGGACAGAACACAGGTCACCCTCCGCCGAAGGCAACTATCTACTGTCTAACATTGCCTCCTAGGCCTGCCATATATAACCATCAAAAACAGTTTAGAATAAAGTGAATTGTTACAATTTTTATTTTTCATTTTTGTGTTTACATTTACTCTCAATGACATGTTTATTCCCACCTAATATCTTGAGGCTAACCACAAAATCTGCAGCATTTCCAGACAGAAGATACTTGTGACTTCCCTGTACTATCCACTACATACTTGACCTCTTTCTCTTTCTTCCTGTCTTCCCTTTCTCTATACCTTATTGTCTTTCTTTGGAACCTCTTGTAACAAATTTTGAGCCATTTCTCCCCTCACTACTCAAATATCACTTTTATGAAGGGGCGGGGGGGAAACTTAGGTGGCAAAAATATTTTACAGAAACAGTTTTAAACATGTTTTGAAGCATACTGGTCACGTGTTAGAAGGCCAAAAGCCAGGGAATTCATTCCCTTTCATTCATTGTGCTGTCTAGGTTAAGTTTTCACAGGACTTCTTGGTACACTGAGTTTGCCTCAGATTGTCTCCTGCCAGTTACAGGGAGTGGAGAGGACTTTGATATATTGGTAATTAGAAGCATTGCTGATATGGTCTTCGGTGGGAGAACCTGTGTCTAAGGTTCCTTCTCATCTGTATTCCAACACTTTCATTTAATCCTACTTCATAAGTGCCTCCAAAGCAAGGATTTTTTTTTTGGTTTAGCATGGTTTCTTTGATATAACAATAGACCGACCAAGATTTTCCTTATGCCATCTGTTTTTTTGTAATTATGATGCAATAGAGAACTGTTTGCTTGTTTATCATTTAAATCTTGCCTTCTTCCCAAAACGATTTCAAATAGCTTGAAGGAAAATGAATAAAATATATTGAGCACCTACCCTATGCCAGACTCTATACTGAAGGGTTTCTATAGGTTATTTCATTTACTCCTTAAAACAACCACATGAGATAAGTAGTATTAGCCACATTTTTGAGGATAAGACTGAGGCTTAGGGAAATTGTGTTACAAGGCTAATAAGCGAGGTCAGGGATTCGAGGTCAGGGATTCAAACCCAGCGTGCCAAGGCCACTAACCATTATGTGGAAAGCTTAGGTAAGCGCTTGTATATAGGACAATCAAGAATAAAAGAATATGTCCATTAGAAGGATTGTACTGGGCTAATCTTTCGTTTTAAAGAACAGCAGCAGCATTGGAAAAGAGCGGTTAACAGTTTTTATTAGCCAATTTCTATTCTAGAACACTGAGAGGAGCTGTTGACAGGCCCTGGTTAGCCCCAGCAAGTAGTTGTATTAAAATTACCAAACTATAGGCCTGCATTAAGGTATAAAATAAGAATGGGGACTGGAAGGGATATAAATATCTGCTAAATATAATAATTTCAGTTCTAATCACTATTTTCTTCTGAAGATTATTTGCCAGTACATAGGCAGATCACTGTCTCTCCTTTAGGTTGATGGTATATGACTACAGACTTTGTCATTTAGGGTCCAGAAAGATCACCCTAGCTAGTAGCGTTTTAAGGTAGAGAACTAGATATTGTTTCATTGCCTGTGGTTTTCTGTTCTTGTAAGAGAATTGAGCTTGGGTCTTCACTGCCACGTGACACCTTCAGATAAGGGGCAGAGACAGCTGGCCTGAGGATTGTACAGAGGTCTTACCTTGATAGCTCCTCTCCAATCCTATGCATCCTAGGAACACTCAAGACACTAGGTTGTATCTTTGCAGATACTGTTTTAGTGTCTTCTGGAACCAAGTCTCTTACTTAATCCTGGCCTGGTTTCATATTCTCTCTATTGTATTCTCTCTATAGTTTTTGTCTTACTCTGGAACTCTTCCAAGGACAGACATTGAAGAAAGGTATTAGAATAGCAAAGGCAACAAATTGCAAGGTATACTTATGGCATAGCACATCCCATTAATTATAGAATAAAAACACAACATCTGTTTTCTGCCTCTAATATTAAATCTTGACATTTGCACAACACATTTTAGTTCATAAAGCTCTCATATCTCAGATAATCACTGAGTTAGGAGACTGGTTATCTGCAGAGGGCTTTATCCTTTACAAGGGCTCTTGGGTACGTTACTTCACGAAACCCTCAGGGAAGCTCCAGTTTCTTGGGGATCTGGGGCCGGGGCATATGTCTTTGGATACCCAGTTTGGTGCTGTGCACAGCACTGCTGTACCTCCTATTCATTTCCCATCTCTTACCCCACAAAGACTCCTTCCTTCATTCCTTCTATTGCTGATCTGTTTTCCTTCATCTTCCTAGGCTGCCAAAGTAAATGCAAAACAAGCACCAGAAATCTCAGCTTGTGATTTCTGAAGGGCATTTTTAAATGGCAAGTTTGGTGTGGCACTGTTACATGTTCTTTTTTCTTTGGAGAGCAAAGCCCTTTGAGAGAGCAGGAACTCTTCTGTCAATGCATACGTTGTAGGATCCATACTGTGGAATCTCTTGTACCTAGTGCTGCGTGAAAACAATGAGGATTCCAAGTCTACTTCACTGGACGTCGGTTCTCAAACTTTTAAGATACTAGAAGTCCTTTTATTAAGCCAAAAGACCCTATGTATTAATTCTGTCTTCCAGGGGTAGGAGTTGGGGTGGGGTTTGGAAAGCTTTGTCTGGATAAATAATTAGTATTGTAGTTCCATTTATTTGATGTCTGATTTTGCGCTTATTAAAATTGATTTAAATCCTCAATGGAAAATGATTTTTTTTTTTTCAAATGCCAAGTGTTGTGTGACTTGCATTTGGATTATTCCCGGTGCAACCTGAAGATTCCTTGTGATGAGTTGTGGTTCCATCATCTTGGGAACCACTAAGAGAATTCTGTTTTACTCACAATCCAAACAATAAATGTTTTTTTCCCTATGTATGCCTTTATCCAGCACACAGTTTGCTAGACTTATGGATGAATATGGGTTAATATAACATGGTATCTATCCTTCTGGAAACAGACTTTTAAAACCTTACTAAGCATTCTCTGCATTCATCAAATGTGAAGTGAGTGCCTGGTGTGTGCCAGGCATCGAGCTGGGCACAGCATATCCCTGCCCTCAGAGCTTTACAGTCCAGTGAGTTCAACAGAAGATGAACAGTTTTGATGACACAAAAAATAGACACATGTGCATGCTGTGATAGGGGGAGATACAAGTTCCTGTGGAAGCATCATCTGGGAGGACCAGGGAAGGCATCTTGGAAAAACTGAGCTCTGAAAGATGGATAGAGTTAACCACATGAAGAGTGGAGAAGGGTACTTCAGACAAGGTGAACAGCATCAGGAAAGCCCAGGGAGGGTATAGAAAAGAAAGAACAGTAATTCTTGCAGTGGCTTTCAATGGGAGTGGCAGTCATGGAAGGAAGGAGAGGTAGCAGGGACCAGCTTTTGAAGGTCTTTGTGTATCACATTTTAAGAAGTTTAAATTTTAACCTAAGGTCACTGGGAAGCCATTGGCAGATTTTGTATGTTAGGAAGTTCACCACTCACCTACTTGGAGTATTGCAGGTGGAGCTAATGTGGATGGGCCTCCTGCCCATTATTAAATCCTGTTCCTGTCAGGAACAGGACAGCCCATGCTGTCTCTCCCTGTGTGTCTGTCTCTCCCTGTGTGTCTGTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCAAAAGCTAAAGGAAAGCGCATAGGTTCCAGAAGGAAAAAGAAATAACCACTAGAAAAATAAGTATAAGCTGACTTTACCATGGCGCAGTGAGATTCCAAACCAAAATAAGGTTTCTAGGGATTGAGCTTTTAATACTGGTACTCCAACAGGGAGATAGGACTTGGGAAGCTGACGCTGTGTGAAAGTTACAGAATTAAGCAGCCTGCAAACCTGGACCTTTGAAAATCGTCCTACTGACCCAGGAAAAGTGCAAGGAAGTGGGTTCTCCAGAACCTTGGGTAGGCCAAACATTACTTGAAGGCATCGATCTAAATAATACACAAAAGCATTATTCAGGAACACCCTGAGAAATTAACATAAAAACTGATTTGGCCAGGCATGGTGGCTCAGCCTCTGGTAACAGTGCTTTGGGAGGCCAAGGTTGGAAAATCACTTGAGGCCAGGAGATCCAGGCTGTAGTGAGCTATGATTGTACTACTGCACTCCAGCCTGGGCAACAGAGGGAGAGTCTTAAAAAAGCAAACTGTCCAAGATCATTGAAACCATTAGCACTTAGGAAGAAACAAATGAAATTACATTCAAGGGGCTCACATTTAAATCCAGGGCTCTCAGGACTCCCAAAGTAAAAAGATGGACATAAAATAAAAAAATTACAAGCCACTTGAGAAAAAAATAAATCACCATGAGGTAGAGATAGCAGAGGAAAAATTACACATGAAGATCTAGGAATTAGGGAGCTATCCAAGATAGACTGTGAAAGTATGTTGCAAGTGACTGAGGGTAATGAAAAAAATGTCATAAGAGCATGAATTAGAAGCGTTTTGAGAAAGAATGAAGATAATGTGATCATTGACTGTAAACTCATTTGATGGGCAACAATAGATGAGACACAGCTATTAAGAGTGGATCGATAACCTTGAATGTGGATGTGAGGCAACTGTAGTATAGCACAAAAAGGTTGAGAAATGATGGAGCCCTTAAGCTGCTTGTGGACACTGGTCTGGAGGGGGACAGGACCAAGAAAACCAGTCATGGAGGTTGAACTAAGTCATCTCTCCAATGTATCCGTGCCTGTTACGTGCCAGTGCCGTTTAGGAGCAGAGGATATTGTAATTTTTTTTAAAGTTCCTATGAATACCTTCTAGTGGGTCATAATGGCTCAACCGGGAAATGGCAGTAGAGATGAAGAGATGGATGGATTCGAAAGACATTTTTTGGAAGTTGGAATTAACAGGATATGGTGAATAATCAAGAGATAGTAAAAGCATAATGGAGGAAACAATGGTTCTTCCTGTTACCATAGGAAGAAGCTTTGGAGTAGAGTTTTATTCATTTTAAATGCATTTATTGTGCACTTTATTATAGGTATTGGAGATTGATGGAAAATAGTCTCTGACCTCAAAGAGTTTCACAGGAAAGATGAGCGATGGCTATGTAATATGACCAATACTGGGATAGAGAGGTGCCCAGGTCACTACGGGAGGACTTAGGTGATTTCTAACTATGTCTGAGAGTAGGGGAAATGGGATCAAAGAAAACATCTCAGAAGACATGAAGCTTGAGCTTATGTCTTGAAAAATTTAAAGTTTAACCTAACCAAGGATAAAGAATCAGAAGAAACAGCATATTCAAAAGCTAAAGAACACGGGACTCTTGTGTGCTTTGCATGTACACACGTGTGTGCGTGTGTGTCTGAAAGGATTGGAGAGGAGGGCGAAGAGAATAACAAGATGAACGTCAACCTAATGTAGAATGTTTGAAGTTTGTATTTCACTTAACAAGACAGCGGGGAGTGATGGAAGGATCTTAGATAGGAAAGGGACATGAGCACGTTTGCCAAGAGAGCTCGTTCTGATCATAGTGGGTACGTGAAGGTGACAAATCTGGAGGCAGATAGCTCACATTTGGAGGCAGTTGCAGTCATCCAGATGAGAAGTGAGAGGGACCTAAGCTGTAAATTGTGGGAATAAAGACAAGACCCGTTAAAAAGAAAGAGAACACACCATGTAGCGTGGAAAGGAGAAGGGTGGAGAGTAGCCTGTGCAGAAGGAACAACCTTCAAAAAGACATGGAAGACTGAAAAGACACCCTGTTGTAGGGAGATCAGCAATGCATTTTTTATAACCAGGTGATACAGGGAAAAGGTAGGATCTGAAGCTTGAAAAATAGATTGGGGGCTGATTGTAAAGAGCTTCGTGTCATTCCCAGGATTTTGGAACTGATTTTACTAACATGAAAAAGGTTTTGTTTTAAAATACTGAGTAATATAGTTGGAACTATAATTTAGAAAGATAATAGCTGGTGCCATCACTCTTCTAAGCAAAGATAGTAATACATTTAATGCTCATAGGCTTTAGTAATACATTTAATCCTTACAGTAAGCCTATTAGATAAAAACCATTATTATCTCCCTTCTATAGACAGAGAAACTGGCATTAGGAGAATGAGAACTTGCCTATGGTCCCACTCTGGAAATACCTAGTAAGCGACAGAGCCAGGATTCAAACCCAGGCAGCTTGACTCCAGAACTTTCGCTCATAACCTTACACATCTCCCTCATGGTTGGTGTTTCTCAACCATGGATACACATTCGAACTGCAAGTAGCATCTCTAAACATACAGTTACCTGAATTGACTGAATCAGAGTGTCTGAAAAATGATGTGTGATACTATGTTTTGCAAAATCTCCACAGGTAATTCTGTTGTACTTTGCTTATAGTTGAGTACTGCAGGGATCTTAGGAAGTTAGAGCAGTAGTCCAGGCAGGAGATGATGAAGGCTCAAACTAAAGCAGTCTGTAGGAAGGAAGAGAAGGGAACCGGTTTGGAGACTTAAGCGGGGGAATTGGCAGTATTTGTGAAGTGGAAATGCAGTATTTTCTTGCAGAGTATGAACCTTGCCTAGGAAAGGGAGTAGAGGACCATACCTTTAGTTGTAAATTATCCTCTCCCAACTGGATCTGTTGATTTATGGCTATGGTGGTTGGGGAAAAGAGGATTTAACCATTTGAAGAAGTTTGTGTAGAGGATTATGATTGAACTCAGGCTGTTGTCCTTGTGTATAGTTTCATGCTTATACTCTTGTTTGTCTTTACTTCTCTATCCAG
Seq C2 exon
GGCCCTTGGAAGAAAATCCTCGCTGTGTCCAGGCTGAGGCGGGGGGCTAATGACAGTGTGAGCTCTAGATGGTGTGAGACCACCCCAAAGCCAAGAAATGGCTACAGCCGTGGAACCAGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTGATGGTGAAACTGGAAGATGATTTCACCTGTCGGCCAGAGTCTGTCTTACAGAGGGATGACCCGGTGCTGGAAACCTCCCACCAGAACTTCCGACGCTTCCGCTACCAGGAGGCAGCAAGCCCTAGAGAAGCTCTCATCAGACTCCGAGAACTTTGTCACCAGTGGCTGAGACCAGAGAGGCGGACAAAGGAGCAGATCCTAGAGCTGCTTGTGCTGGAACAATTTCTTACCGTCCTACCTGGAGAACTACAGAGCTGGGTGCGGGGCCAACGGCCAGAAAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261:ENST00000336139:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.209
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains