HsaINT0186416 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123601195-123610900:-
Coord C1 exon
chr11:123610825-123610900
Coord A exon
chr11:123601694-123610824
Coord C2 exon
chr11:123601195-123601693
Length
9131 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTCTTTACTTCTCTATCCAGGGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
TAGACAATCATTCCAAGGGTACAACAAGGTTTACCACAATGTGAGGGACTCAGCCATTGCAAATTGTACAGATGAG
Seq A exon
GTAAGTTACAGGTTTACATTTTTTTTTCCCAGTAAATTTGGCACAGATTTAAAATGTGAAACAGTTCTATACCCCTTGTTTTTGCTGTTCTCTCACCAGCAAACCCTTTAGTTTGGCCAGCAATGGCTTTCTGCATGAACTTCAGATTTACTTCATTTGCTAGGTGGTGGTTCTCAAACTTACTATAAGCACCTGAAGGGCTAGTTAAACGCATATTGCTGGGGCCCACCCCTAGAGTTTCTGGTAATAGGTCTGTGCTGGGGCTTGAGAATTTGTACTTCTAACAAGGCTCAGGTACTGATGCTGCAGATCTGGGTTCTTCACTTTGAGAACAACTACCTTTTGGCCAAATGTGATATATGTATTGCAGTAGGTTGAGGTTCAGAATACCTTTGTTTGAGTACTTCTGTGTTGGAAACTAGTAATCTGATCTTTTATAGATAATCACTTAGGTCTGAATATTTTGTTCGCAAAATTAAGAAAGCGTACTTAAAACAACTGAATGCTATATGCCAAATTTGAGGTGAAATATTGATAAGTTCTTCCCCTTGATTTTCTTAATTCTCTTGATAGGGGCTTCACGTTTTGATCAAAATATTACACCTGTATTCTGGGCTTTTGCTGTGAATTCCTAGTATTGCTAAAATTCTGCAATTTCTTAACTACCTGTTAAGTTCCTCAAGGTCAGAGCTTCTGCTTTTTTTATCTTTCTTTGCCCAGCACCTTGAATAGTGTGGGACACGTAATTGACGCTCAGTAGATATTTGTGTATTGAACTCCATCCCTTGTCCTCCTCCCCTCTTGATGTTTTTCTCTACTGGCCTTATGCTACACAGTAAAGCAGGGCATGATTATGCCACTTGATTACCCCCAAGAGATTGGAATAAATGCTTATGCCAAATTCCTACAGCTATCCCTGTGAATGGTTTATTACCCAGGAGCCCTGACACTGGCTGATTTCTGAATTTTCAGTGCTTCTGTAATATATACTAGTTGGGGGAGGAGAAATAGAAAGCTTAAACTCAATGTGCGTTTATTGAATACCTTTTCTACTAAGGGCTCCACAAAGTGGTAGGCACTGGGAATATAAAAATGAATAAGGAGACCCTTGCTCTCGAGGGCAGGGCCCACAGTGGGGAGACAGACGTTAAGCCATGCCCACGACAAGAATGACTTCTGAGATTCCTTCTCTGGATCATGATTTAGTCTTCAGTGGAAACCTGGTACTCCTCAGATTCCTCTGGTTCAACAGGCGGGGATCCCATCCCTTATCATCTCCTCAAATGCTAAAGGACCCTTGAGCAAAGCCAGGAGGAAGTCATCTAGACGTGAAACAGGGAGTATCCACACAGGCTGTGTTAATGACAAAGCTAAAAACATAGTAAATGACTTTTGAATTTACTGCTGTTATGAATTATCTATAGCAACACCTCCGGTCAGCTCTGTTATATATGTTATTGCGTTATTTCCCATTAAATGATGGTTCCTCTGACTATCTGATTGGCATTGACTATGTTTGTTGTAGAGATTGCATACATCTAGTTTAACTCTGGCTGTCAAATGAGAGCAGTTACTCTTATCAGGATGGGTGTCAGGTTTGATGTCCCCTCCTTTTCCTGCTTCAGGTTAATTTGTCATGTTCTGTTTTAAACTGAGACATATAGCTTGACCTCCTTTATTTAGGCCATTAACTGCTCTGGGGTAGTTTTCCTGAAGGTTAAAAAGCCTAGCTTCATGATGGAGGTTAACCAACATGACCATGATGGCCAGGTGTATAAATCTGGCCTCTTAAAAATCTGTATTTGAGGCTGGGTGCAGTGGCTCACACCTGTAATCCTAACACTTTGGGAGGCCAAAGCTGGCAGATCACTTGAGCCCAGGTATTTGAGACCAGCCTGGGCAACATGGCAAGACCCCTTCTCTATAAAAAATTTAAACATTAGCTGGGCATGGTGGCATGTGCTGTAGTCCCAGATACTTAGGAGGCTGGGGTGGGAGGATGGCCTGAACCTGGGAGGCAGAGATTGCAGTGAGTTGTGATCTTGCCACTGCACTCCAGTCTTAGCAACAGAGTAAACCCTATCTCAAAACTTAAAAATCTGTGTTTGGCCCCTAGCCGTCCTCAGCTCTTGAGTAAATCTCAGCATCCTAGGCTGTTACATTATGGCCCAAATATTCAATAGAGATGCTGTATATCCTTGTTCCTCTCAAAACCCCTCCTCATCACCATCAAAAAGCTGGTTCAGTTCTCTACCTTTAGATAAAGAATCATCCCAAGACTCAACATGAGCTGCCGTGACTTGTCCAAGATGACACCTCTTTACAATGTAGAGCAGTGGACAGAACACAGGTCACCCTCCGCCGAAGGCAACTATCTACTGTCTAACATTGCCTCCTAGGCCTGCCATATATAACCATCAAAAACAGTTTAGAATAAAGTGAATTGTTACAATTTTTATTTTTCATTTTTGTGTTTACATTTACTCTCAATGACATGTTTATTCCCACCTAATATCTTGAGGCTAACCACAAAATCTGCAGCATTTCCAGACAGAAGATACTTGTGACTTCCCTGTACTATCCACTACATACTTGACCTCTTTCTCTTTCTTCCTGTCTTCCCTTTCTCTATACCTTATTGTCTTTCTTTGGAACCTCTTGTAACAAATTTTGAGCCATTTCTCCCCTCACTACTCAAATATCACTTTTATGAAGGGGCGGGGGGGAAACTTAGGTGGCAAAAATATTTTACAGAAACAGTTTTAAACATGTTTTGAAGCATACTGGTCACGTGTTAGAAGGCCAAAAGCCAGGGAATTCATTCCCTTTCATTCATTGTGCTGTCTAGGTTAAGTTTTCACAGGACTTCTTGGTACACTGAGTTTGCCTCAGATTGTCTCCTGCCAGTTACAGGGAGTGGAGAGGACTTTGATATATTGGTAATTAGAAGCATTGCTGATATGGTCTTCGGTGGGAGAACCTGTGTCTAAGGTTCCTTCTCATCTGTATTCCAACACTTTCATTTAATCCTACTTCATAAGTGCCTCCAAAGCAAGGATTTTTTTTTTGGTTTAGCATGGTTTCTTTGATATAACAATAGACCGACCAAGATTTTCCTTATGCCATCTGTTTTTTTGTAATTATGATGCAATAGAGAACTGTTTGCTTGTTTATCATTTAAATCTTGCCTTCTTCCCAAAACGATTTCAAATAGCTTGAAGGAAAATGAATAAAATATATTGAGCACCTACCCTATGCCAGACTCTATACTGAAGGGTTTCTATAGGTTATTTCATTTACTCCTTAAAACAACCACATGAGATAAGTAGTATTAGCCACATTTTTGAGGATAAGACTGAGGCTTAGGGAAATTGTGTTACAAGGCTAATAAGCGAGGTCAGGGATTCGAGGTCAGGGATTCAAACCCAGCGTGCCAAGGCCACTAACCATTATGTGGAAAGCTTAGGTAAGCGCTTGTATATAGGACAATCAAGAATAAAAGAATATGTCCATTAGAAGGATTGTACTGGGCTAATCTTTCGTTTTAAAGAACAGCAGCAGCATTGGAAAAGAGCGGTTAACAGTTTTTATTAGCCAATTTCTATTCTAGAACACTGAGAGGAGCTGTTGACAGGCCCTGGTTAGCCCCAGCAAGTAGTTGTATTAAAATTACCAAACTATAGGCCTGCATTAAGGTATAAAATAAGAATGGGGACTGGAAGGGATATAAATATCTGCTAAATATAATAATTTCAGTTCTAATCACTATTTTCTTCTGAAGATTATTTGCCAGTACATAGGCAGATCACTGTCTCTCCTTTAGGTTGATGGTATATGACTACAGACTTTGTCATTTAGGGTCCAGAAAGATCACCCTAGCTAGTAGCGTTTTAAGGTAGAGAACTAGATATTGTTTCATTGCCTGTGGTTTTCTGTTCTTGTAAGAGAATTGAGCTTGGGTCTTCACTGCCACGTGACACCTTCAGATAAGGGGCAGAGACAGCTGGCCTGAGGATTGTACAGAGGTCTTACCTTGATAGCTCCTCTCCAATCCTATGCATCCTAGGAACACTCAAGACACTAGGTTGTATCTTTGCAGATACTGTTTTAGTGTCTTCTGGAACCAAGTCTCTTACTTAATCCTGGCCTGGTTTCATATTCTCTCTATTGTATTCTCTCTATAGTTTTTGTCTTACTCTGGAACTCTTCCAAGGACAGACATTGAAGAAAGGTATTAGAATAGCAAAGGCAACAAATTGCAAGGTATACTTATGGCATAGCACATCCCATTAATTATAGAATAAAAACACAACATCTGTTTTCTGCCTCTAATATTAAATCTTGACATTTGCACAACACATTTTAGTTCATAAAGCTCTCATATCTCAGATAATCACTGAGTTAGGAGACTGGTTATCTGCAGAGGGCTTTATCCTTTACAAGGGCTCTTGGGTACGTTACTTCACGAAACCCTCAGGGAAGCTCCAGTTTCTTGGGGATCTGGGGCCGGGGCATATGTCTTTGGATACCCAGTTTGGTGCTGTGCACAGCACTGCTGTACCTCCTATTCATTTCCCATCTCTTACCCCACAAAGACTCCTTCCTTCATTCCTTCTATTGCTGATCTGTTTTCCTTCATCTTCCTAGGCTGCCAAAGTAAATGCAAAACAAGCACCAGAAATCTCAGCTTGTGATTTCTGAAGGGCATTTTTAAATGGCAAGTTTGGTGTGGCACTGTTACATGTTCTTTTTTCTTTGGAGAGCAAAGCCCTTTGAGAGAGCAGGAACTCTTCTGTCAATGCATACGTTGTAGGATCCATACTGTGGAATCTCTTGTACCTAGTGCTGCGTGAAAACAATGAGGATTCCAAGTCTACTTCACTGGACGTCGGTTCTCAAACTTTTAAGATACTAGAAGTCCTTTTATTAAGCCAAAAGACCCTATGTATTAATTCTGTCTTCCAGGGGTAGGAGTTGGGGTGGGGTTTGGAAAGCTTTGTCTGGATAAATAATTAGTATTGTAGTTCCATTTATTTGATGTCTGATTTTGCGCTTATTAAAATTGATTTAAATCCTCAATGGAAAATGATTTTTTTTTTTTCAAATGCCAAGTGTTGTGTGACTTGCATTTGGATTATTCCCGGTGCAACCTGAAGATTCCTTGTGATGAGTTGTGGTTCCATCATCTTGGGAACCACTAAGAGAATTCTGTTTTACTCACAATCCAAACAATAAATGTTTTTTTCCCTATGTATGCCTTTATCCAGCACACAGTTTGCTAGACTTATGGATGAATATGGGTTAATATAACATGGTATCTATCCTTCTGGAAACAGACTTTTAAAACCTTACTAAGCATTCTCTGCATTCATCAAATGTGAAGTGAGTGCCTGGTGTGTGCCAGGCATCGAGCTGGGCACAGCATATCCCTGCCCTCAGAGCTTTACAGTCCAGTGAGTTCAACAGAAGATGAACAGTTTTGATGACACAAAAAATAGACACATGTGCATGCTGTGATAGGGGGAGATACAAGTTCCTGTGGAAGCATCATCTGGGAGGACCAGGGAAGGCATCTTGGAAAAACTGAGCTCTGAAAGATGGATAGAGTTAACCACATGAAGAGTGGAGAAGGGTACTTCAGACAAGGTGAACAGCATCAGGAAAGCCCAGGGAGGGTATAGAAAAGAAAGAACAGTAATTCTTGCAGTGGCTTTCAATGGGAGTGGCAGTCATGGAAGGAAGGAGAGGTAGCAGGGACCAGCTTTTGAAGGTCTTTGTGTATCACATTTTAAGAAGTTTAAATTTTAACCTAAGGTCACTGGGAAGCCATTGGCAGATTTTGTATGTTAGGAAGTTCACCACTCACCTACTTGGAGTATTGCAGGTGGAGCTAATGTGGATGGGCCTCCTGCCCATTATTAAATCCTGTTCCTGTCAGGAACAGGACAGCCCATGCTGTCTCTCCCTGTGTGTCTGTCTCTCCCTGTGTGTCTGTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCAAAAGCTAAAGGAAAGCGCATAGGTTCCAGAAGGAAAAAGAAATAACCACTAGAAAAATAAGTATAAGCTGACTTTACCATGGCGCAGTGAGATTCCAAACCAAAATAAGGTTTCTAGGGATTGAGCTTTTAATACTGGTACTCCAACAGGGAGATAGGACTTGGGAAGCTGACGCTGTGTGAAAGTTACAGAATTAAGCAGCCTGCAAACCTGGACCTTTGAAAATCGTCCTACTGACCCAGGAAAAGTGCAAGGAAGTGGGTTCTCCAGAACCTTGGGTAGGCCAAACATTACTTGAAGGCATCGATCTAAATAATACACAAAAGCATTATTCAGGAACACCCTGAGAAATTAACATAAAAACTGATTTGGCCAGGCATGGTGGCTCAGCCTCTGGTAACAGTGCTTTGGGAGGCCAAGGTTGGAAAATCACTTGAGGCCAGGAGATCCAGGCTGTAGTGAGCTATGATTGTACTACTGCACTCCAGCCTGGGCAACAGAGGGAGAGTCTTAAAAAAGCAAACTGTCCAAGATCATTGAAACCATTAGCACTTAGGAAGAAACAAATGAAATTACATTCAAGGGGCTCACATTTAAATCCAGGGCTCTCAGGACTCCCAAAGTAAAAAGATGGACATAAAATAAAAAAATTACAAGCCACTTGAGAAAAAAATAAATCACCATGAGGTAGAGATAGCAGAGGAAAAATTACACATGAAGATCTAGGAATTAGGGAGCTATCCAAGATAGACTGTGAAAGTATGTTGCAAGTGACTGAGGGTAATGAAAAAAATGTCATAAGAGCATGAATTAGAAGCGTTTTGAGAAAGAATGAAGATAATGTGATCATTGACTGTAAACTCATTTGATGGGCAACAATAGATGAGACACAGCTATTAAGAGTGGATCGATAACCTTGAATGTGGATGTGAGGCAACTGTAGTATAGCACAAAAAGGTTGAGAAATGATGGAGCCCTTAAGCTGCTTGTGGACACTGGTCTGGAGGGGGACAGGACCAAGAAAACCAGTCATGGAGGTTGAACTAAGTCATCTCTCCAATGTATCCGTGCCTGTTACGTGCCAGTGCCGTTTAGGAGCAGAGGATATTGTAATTTTTTTTAAAGTTCCTATGAATACCTTCTAGTGGGTCATAATGGCTCAACCGGGAAATGGCAGTAGAGATGAAGAGATGGATGGATTCGAAAGACATTTTTTGGAAGTTGGAATTAACAGGATATGGTGAATAATCAAGAGATAGTAAAAGCATAATGGAGGAAACAATGGTTCTTCCTGTTACCATAGGAAGAAGCTTTGGAGTAGAGTTTTATTCATTTTAAATGCATTTATTGTGCACTTTATTATAGGTATTGGAGATTGATGGAAAATAGTCTCTGACCTCAAAGAGTTTCACAGGAAAGATGAGCGATGGCTATGTAATATGACCAATACTGGGATAGAGAGGTGCCCAGGTCACTACGGGAGGACTTAGGTGATTTCTAACTATGTCTGAGAGTAGGGGAAATGGGATCAAAGAAAACATCTCAGAAGACATGAAGCTTGAGCTTATGTCTTGAAAAATTTAAAGTTTAACCTAACCAAGGATAAAGAATCAGAAGAAACAGCATATTCAAAAGCTAAAGAACACGGGACTCTTGTGTGCTTTGCATGTACACACGTGTGTGCGTGTGTGTCTGAAAGGATTGGAGAGGAGGGCGAAGAGAATAACAAGATGAACGTCAACCTAATGTAGAATGTTTGAAGTTTGTATTTCACTTAACAAGACAGCGGGGAGTGATGGAAGGATCTTAGATAGGAAAGGGACATGAGCACGTTTGCCAAGAGAGCTCGTTCTGATCATAGTGGGTACGTGAAGGTGACAAATCTGGAGGCAGATAGCTCACATTTGGAGGCAGTTGCAGTCATCCAGATGAGAAGTGAGAGGGACCTAAGCTGTAAATTGTGGGAATAAAGACAAGACCCGTTAAAAAGAAAGAGAACACACCATGTAGCGTGGAAAGGAGAAGGGTGGAGAGTAGCCTGTGCAGAAGGAACAACCTTCAAAAAGACATGGAAGACTGAAAAGACACCCTGTTGTAGGGAGATCAGCAATGCATTTTTTATAACCAGGTGATACAGGGAAAAGGTAGGATCTGAAGCTTGAAAAATAGATTGGGGGCTGATTGTAAAGAGCTTCGTGTCATTCCCAGGATTTTGGAACTGATTTTACTAACATGAAAAAGGTTTTGTTTTAAAATACTGAGTAATATAGTTGGAACTATAATTTAGAAAGATAATAGCTGGTGCCATCACTCTTCTAAGCAAAGATAGTAATACATTTAATGCTCATAGGCTTTAGTAATACATTTAATCCTTACAGTAAGCCTATTAGATAAAAACCATTATTATCTCCCTTCTATAGACAGAGAAACTGGCATTAGGAGAATGAGAACTTGCCTATGGTCCCACTCTGGAAATACCTAGTAAGCGACAGAGCCAGGATTCAAACCCAGGCAGCTTGACTCCAGAACTTTCGCTCATAACCTTACACATCTCCCTCATGGTTGGTGTTTCTCAACCATGGATACACATTCGAACTGCAAGTAGCATCTCTAAACATACAGTTACCTGAATTGACTGAATCAGAGTGTCTGAAAAATGATGTGTGATACTATGTTTTGCAAAATCTCCACAGGTAATTCTGTTGTACTTTGCTTATAGTTGAGTACTGCAGGGATCTTAGGAAGTTAGAGCAGTAGTCCAGGCAGGAGATGATGAAGGCTCAAACTAAAGCAGTCTGTAGGAAGGAAGAGAAGGGAACCGGTTTGGAGACTTAAGCGGGGGAATTGGCAGTATTTGTGAAGTGGAAATGCAGTATTTTCTTGCAGAGTATGAACCTTGCCTAGGAAAGGGAGTAGAGGACCATACCTTTAGTTGTAAATTATCCTCTCCCAACTGGATCTGTTGATTTATGGCTATGGTGGTTGGGGAAAAGAGGATTTAACCATTTGAAGAAGTTTGTGTAGAGGATTATGATTGAACTCAGGCTGTTGTCCTTGTGTATAGTTTCATGCTTATACTCTTGTTTGTCTTTACTTCTCTATCCAG
Seq C2 exon
GGCCCTTGGAAGAAAATCCTCGCTGTGTCCAGGCTGAGGCGGGGGGCTAATGACAGTGTGAGCTCTAGATGGTGTGAGACCACCCCAAAGCCAAGAAATGGCTACAGCCGTGGAACCAGAGGACCAGGATCTTTGGGAAGAAGAGGGAATTCTGATGGTGAAACTGGAAGATGATTTCACCTGTCGGCCAGAGTCTGTCTTACAGAGGGATGACCCGGTGCTGGAAACCTCCCACCAGAACTTCCGACGCTTCCGCTACCAGGAGGCAGCAAGCCCTAGAGAAGCTCTCATCAGACTCCGAGAACTTTGTCACCAGTGGCTGAGACCAGAGAGGCGGACAAAGGAGCAGATCCTAGAGCTGCTTGTGCTGGAACAATTTCTTACCGTCCTACCTGGAGAACTACAGAGCTGGGTGCGGGGCCAACGGCCAGAAAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.209
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)