HsaALTD1033403-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113695400-113696971:-
Coord C1 exon
chr11:113696858-113696971
Coord A exon
NA
Coord C2 exon
chr11:113695400-113695443
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGGTACCTCTGTTTTGCAGGAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
ACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAG
Seq A exon
NA
Seq C2 exon
GAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682-8-7,9-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGTTTGCTCAGCTCTC
R:
AGAGCATCTGAGGGAAACAACT
Band lengths:
106-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains