HsaALTD1033403-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113695400-113696971:-
Coord C1 exon
chr11:113696858-113696971
Coord A exon
chr11:113696836-113696857
Coord C2 exon
chr11:113695400-113695443
Length
22 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTGGTACCTCTGTTTTGCAGGAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
ACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAG
Seq A exon
GTAGGACTACTGAGGCTGTTAG
Seq C2 exon
GAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682-8-7,9-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.8=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGTTTGCTCAGCTCTC
R:
AGAGCATCTGAGGGAAACAACT
Band lengths:
106-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains