HsaALTD1033640-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000166987 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr12:57529164-57529674:+
Coord C1 exon
chr12:57529164-57529325
Coord A exon
NA
Coord C2 exon
chr12:57529611-57529674
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTGGGT
5' ss Score
2.99
3' ss Seq
CATTGCCTCCCTTCTTAAAGCCA
3' ss Score
6.48
Exon sequences
Seq C1 exon
CTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGATCTGACCCTGATTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACCTGCACCTGTGGACA
Seq A exon
NA
Seq C2 exon
CCAACAGGCTCAGTTTACAAACCTGTGAGCTACTGTTGGCTGCTGCCCTCCTTCCCAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166987-31-41,32-41-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTGGGGAGAGCTGAGT
R:
CAGCCAACAGTAGCTCACAGG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains