HsaALTD1033662-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127716063-127717016:+
Coord C1 exon
chr9:127716063-127716163
Coord A exon
NA
Coord C2 exon
chr9:127716844-127717016
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TTGCTGTCCTTCGGTTCTAGGAT
3' ss Score
11.68
Exon sequences
Seq C1 exon
CCTGGTGATGGTGCCTAGCAACGTCAGGGCCAGGGCCGCGAGGTAGTTGGCAGAGGCCTCGGGGTCCTCCTGGAAGGGGCCTCATGACAGATTCGGACGAG
Seq A exon
NA
Seq C2 exon
GATGCCCTGAAGGTTGACCAGGGCCCCTCACGGGACATCCCAAAGCCATGGGTGATTCCAGCCCCCAAAGGGATCCTGCAGCACATCTTTGGGACCAGCCACGTGTTCCAAAGCATCTGTGATGTAAAACCAAAGGTCACAGGGTTAACAGTGCCCCTCAAAGTCAGGGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-0-0,1-0,2-0,3-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(6.0=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGATGGTGCCTAGCAA
R:
GGCACTGTTAACCCTGTGACC
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains