HsaALTD1033662-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127716063-127717016:+
Coord C1 exon
chr9:127716063-127716163
Coord A exon
chr9:127716164-127716422
Coord C2 exon
chr9:127716844-127717016
Length
259 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGCTGTCCTTCGGTTCTAGGAT
3' ss Score
11.68
Exon sequences
Seq C1 exon
CCTGGTGATGGTGCCTAGCAACGTCAGGGCCAGGGCCGCGAGGTAGTTGGCAGAGGCCTCGGGGTCCTCCTGGAAGGGGCCTCATGACAGATTCGGACGAG
Seq A exon
GTGCGGGCTTGGGAGAAGACTAACGCAAAGGCAGAGGGCCAGGCAGAGAGACCGAGGCTGGGTTCGCAGGAAAGGGTGAAGGCCGGGAGAGGCAGGGGCAGCAGTCCGACTCAGGGAAGGCCCTGGCCGCCATGCCAAGAACCAGGCATGTGAAAGATCCTTGTAAGGCTCGGCGGCTGCTTGGACAGAGGTCTCTGGCTTGGGTAGCTGGTGGGGAAGGTGACCTCACCAAAATGGGAGAACCTGGGGCAGAAGTCAG
Seq C2 exon
GATGCCCTGAAGGTTGACCAGGGCCCCTCACGGGACATCCCAAAGCCATGGGTGATTCCAGCCCCCAAAGGGATCCTGCAGCACATCTTTGGGACCAGCCACGTGTTCCAAAGCATCTGTGATGTAAAACCAAAGGTCACAGGGTTAACAGTGCCCCTCAAAGTCAGGGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(6.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGATGGTGCCTAGCAA
R:
CTGACTTTGAGGGGCACTGTT
Band lengths:
268-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains