HsaALTD1033773-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr18:49877763-49879090:-
Coord C1 exon
chr18:49878945-49879090
Coord A exon
NA
Coord C2 exon
chr18:49877763-49877882
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
ACGTTTTTCTTGTTGAACAGCAA
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAATTTGCCCAGAACTCTGTGAAGGAAAATCTCATGAAGAAAGAACTGGAGGAGGAGCGATCCCGGTACCAGAACCTTGTGAAGGAATATTCACAGTTGGAGCAGAGATACGACAACCTTCGGGATGAAATGACCATCATAAAG
Seq A exon
NA
Seq C2 exon
CAAACTCCAGGTCATAGGCGGAACCCATCAAACCAAAGTAGCTTAGAATCTGACTCCAATTACCCCTCCATCTCCACATCTGAGATCGGAGACACTGAGGATGCCCTCCAGCAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-58-51,59-51-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(32.7=100)
A:
NA
C2:
PF097894=DUF2353=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGAACTCTGTGAAGGA
R:
GGCATCCTCAGTGTCTCCGAT
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains