MmuALTD1011988-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74714826-74716078:+
Coord C1 exon
chr18:74714826-74714959
Coord A exon
chr18:74714960-74714974
Coord C2 exon
chr18:74715959-74716078
Length
15 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
TTTTTTTTCTCCTTGAGCAGCAA
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTGAATCTTCGCAGAGCTCTGTGGAAGAGAACCTCCTGATGAAGAAGGAGCTGGAGGAGGAACGGTCCAGGTACCAGAACCTCGTGAAGGAGTACTCCCAGCTGGAGCAGAGATATGAGAACCTTCGGGACGAG
Seq A exon
GTGACGATCCTAAAG
Seq C2 exon
CAAACTCCGGGCCACAGGAAGAACCCATCGAACCAAAGCAGCTTAGAATCTGACTCCAATTACCCCTCCATTTCCACTTCCGAAATCGGAGACACTGAGGATGCCCTTCAGCAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-58-48,59-48-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF118403=DUF3360=PD(46.3=92.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGGTCCAGGTACCAGAA
R:
GCTGCTTTGGTTCGATGGGTT
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types