GgaALTD1015130-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8308597-8309587:+
Coord C1 exon
chr10:8308597-8308740
Coord A exon
chr10:8308741-8308743
Coord C2 exon
chr10:8309525-8309587
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTGTTTAATTTGCACTCCAGAGC
3' ss Score
6.01
Exon sequences
Seq C1 exon
ACAATGGAGAAGAAGCTAGTGGAGGAAACAAAGCAGTTGGAGCTAGACCTGAACGATGAGAGGTTACGGTATCAGAACCTGCTGAATGAGTTCAGCCGCTTGGAGGAGCGGTATGATGATCTCAAGGATGAAATGAACTTAATG
Seq A exon
GTG
Seq C2 exon
AGCATCCCCAAGCCTGGACACAAAAGAACGGATTCAACTCACAGTAGCAATGAATCTGAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-45-47,46-47-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGTTCAGCCGCTTGGAG
R:
TCCGTTCTTTTGTGTCCAGGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]