BtaALTD0014199-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58103058-58108251:+
Coord C1 exon
chr10:58103058-58103203
Coord A exon
chr10:58103204-58103206
Coord C2 exon
chr10:58108138-58108251
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GCTGCTTATTTGTGTTGCAGAAT
3' ss Score
8.7
Exon sequences
Seq C1 exon
AGACTATGGAGAAGAAGTTAGTAGAAGAAACAAAACAACTGGAACTCGATCTTAACGATGAAAGGCTGAGATATCAGAACCTTCTGAATGAGTTTAGTCGCTTGGAAGAACGCTATGATGACCTCAAGGAAGAGATGACTTTGATG
Seq A exon
GTG
Seq C2 exon
AATGTGCCTAAACCTGGACACAAGAGAACAGACTCTACCCACAGCAGCAATGAGTCTGAATACACCTTTAGCTCTGAAATTGCAGAAACTGAAGATATTCCATCAAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-30-29,31-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCGCTTGGAAGAACGCT
R:
TTGCTGCTGTGGGTAGAGTCT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development