HsaALTD1042258-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52359968-52364702:-
Coord C1 exon
chr15:52364557-52364702
Coord A exon
chr15:52364554-52364556
Coord C2 exon
chr15:52359968-52360081
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTGGGTTATTTGCCTTGCAGCAT
3' ss Score
7.79
Exon sequences
Seq C1 exon
AAACTATGGAGAAGAAGTTAGTAGAAGAAACGAAACAACTGGAACTCGACCTTAATGATGAAAGGCTGAGATATCAGAACCTTCTGAATGAGTTCAGTCGCCTGGAAGAAAGATATGATGACCTCAAGGAAGAGATGACCCTTATG
Seq A exon
GTG
Seq C2 exon
CATGTGCCTAAGCCTGGACACAAGAGAACAGACTCCACCCACAGCAGCAACGAGTCTGAATATATCTTTAGCTCTGAAATTGCAGAAATGGAAGACATTCCATCAAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-63-69,64-69-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCAGTCGCCTGGAAGA
R:
TGTGGGTGGAGTCTGTTCTCT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains