HsaALTD1036965-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9433668-9434235:-
Coord C1 exon
chr19:9434190-9434235
Coord A exon
chr19:9434075-9434189
Coord C2 exon
chr19:9433668-9433786
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TGTATTTTTTTTTTTTTTAGTAG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GCAATGCTAAGAAAAGAGTGATATGCAAGCTGAGACCAAAAATATG
Seq A exon
GTATGATTTAGCCATACTGAAGGGGAAGGAAATAAGAGCTGGGCAAAGCATTCTGTGAATTGGCTGACTCCACTTCTATGGTGAGAGAGAGGAGTGCATCAAAGATTACTCCCAG
Seq C2 exon
TAGAGATGGTTTCAGCATGTTGGCCAGTCTGGTCTCAGACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAATGCTGGGATTACAGGTATAAGCCACTGTGCCTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-3-3,4-3,5-3,6-3-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGCTAAGAAAAGAGTGATATGC
R:
TTTGGCCAGGCACAGTGG
Band lengths:
165-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains