HsaEX0073293 @ hg38
Exon Skipping
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9420065-9435193:-
Coord C1 exon
chr19:9435108-9435193
Coord A exon
chr19:9433668-9433786
Coord C2 exon
chr19:9420065-9420218
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTTTTTTTTTTTAGTAG
3' ss Score
7.4
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAACAACGAGTTTTCGTCGTTCGAATCAGGTTGACTGGTCCTTCATCCCCCCAATCTCCCGTACCTGGCGAGTCCAGCTCGTCGCG
Seq A exon
TAGAGATGGTTTCAGCATGTTGGCCAGTCTGGTCTCAGACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAATGCTGGGATTACAGGTATAAGCCACTGTGCCTGGCCAAA
Seq C2 exon
GATACCGTTAACCCTGGATAAAGAGAATGGAGGTTACCTCTGTCCGTGTAGATTCCTAAGCTGTCCTGGAGTGATCCTTGGAGTAAAGGAAAGGTGCTTTGAAGCACATTCAGCCATCAGCCCTGTGGGATGGCAGCCACTGATTTGTCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652_MULTIEX1-3/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCGTTCGAATCAGGTTGAC
R:
ATAGGACAAATCAGTGGCTGCC
Band lengths:
226-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development