HsaALTD1037034-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57310717-57314631:-
Coord C1 exon
chr3:57314494-57314631
Coord A exon
NA
Coord C2 exon
chr3:57310717-57310950
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCATTTTTCCTTTGCTTCAGTTA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCCTGGGAGAAGTTACTGTTTGGAGTTTGTTTTTTTCATGCCCTTGTGCAAGAGAGAAAGAAATTTGGTCCTCTTGGTTGGAATATTCCATATGGATTTAATGAATCTGACTTGCGCATCAGTATCCGACAACTGCAG
Seq A exon
NA
Seq C2 exon
TTATTTATCAATGAATATGATACAATTCCATTTGAAGCTATATCTTACCTGACTGGGGAGTGTAATTATGGAGGAAGAGTGACAGACGATTGGGACAGACGTCTTCTATTAACCATGCTGGCTGACTTTTATAATCTGTACATAGTTGAAAACCCTCATTATAAGTTTTCTCCCAGTGGAAACTATTTTGCACCTCCTAAAGGCACTTATGAGGACTACATTGAATTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-89-96,90-96-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(1.1=3.8),PF0302810=Dynein_heavy=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGAGAAGTTACTGTTTGG
R:
AGACGTCTGTCCCAATCGTCT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains