HsaALTD1037034-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57310717-57314631:-
Coord C1 exon
chr3:57314494-57314631
Coord A exon
chr3:57314390-57314493
Coord C2 exon
chr3:57310717-57310950
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCATTTTTCCTTTGCTTCAGTTA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCCTGGGAGAAGTTACTGTTTGGAGTTTGTTTTTTTCATGCCCTTGTGCAAGAGAGAAAGAAATTTGGTCCTCTTGGTTGGAATATTCCATATGGATTTAATGAATCTGACTTGCGCATCAGTATCCGACAACTGCAG
Seq A exon
GTAAAATTAACAAGAAATTAACATTCATGAAGGATCACTATTTATCAGGCCCTAGGCAAGTCTTTTGCTTGGAATAGCTGATTCACTTCTCCCAACACTAACAG
Seq C2 exon
TTATTTATCAATGAATATGATACAATTCCATTTGAAGCTATATCTTACCTGACTGGGGAGTGTAATTATGGAGGAAGAGTGACAGACGATTGGGACAGACGTCTTCTATTAACCATGCTGGCTGACTTTTATAATCTGTACATAGTTGAAAACCCTCATTATAAGTTTTCTCCCAGTGGAAACTATTTTGCACCTCCTAAAGGCACTTATGAGGACTACATTGAATTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-89-96,90-96-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(1.1=3.8),PF0302810=Dynein_heavy=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGAGAAGTTACTGTTTGG
R:
AGACGTCTGTCCCAATCGTCT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains