HsaALTD1037679-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000177103 | DSCAML1
Description
DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr11:117780755-117816430:-
Coord C1 exon
chr11:117811667-117816430
Coord A exon
chr11:117811444-117811666
Coord C2 exon
chr11:117780755-117780810
Length
223 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCCCTTGCCTCTCCTGCAGCCC
3' ss Score
10.82
Exon sequences
Seq C1 exon
TGGGTTAAGGTGGGGGAATACAAGAGGAGGACGCAAAGGAGGCTTTGGATTGGGAAGAAGGGCAGCAATGAGATGCAGCTGTAATCCAGGAATAGTCAGGGAAGCAGATAATTTGGTTAAAATATCTCGGCCTAATAAGGGAACTGGGCAGGTGGAGATAACTAAAAAAGAGTGCATAAAAGAGTGTTGTCTAAGTTGGCACCAGAGTTGGGGAGTTTTAAGAGGTTTAGAAGTCTGGCTGTCAATACGCACAGCAGTTATGGAGGCAAGGGAAACAGGCCTTTGAAAAGAAGGTAATGTGGAGTGGGTAGCCTCCGTATTGATTAAGAAGGGGATGGACTTACACTCCACTGTGAGAGTTACTTAAAGCTCGGCATCCGCGATGGTCTACGGGGCTTCCAAGGCAATCAGGCAGCCTCAGTCTTCAGCTGCTAAGCCGAGAAGGAGTCAGTCAGGGAGCCTTGGGCCAGAGTTCCAGGGGCTCTGGGAGTGGCTGCCAG
Seq A exon
GTGAGTTGAACAGTCCGATTTCCAGTGGGGTCCCGCGCAGATGGGACACGGCTTAGGAGGAATCCTGGGCTGCAGGCATTCCTTGGCCTGGTGTCCAGATTTCTAGCACTTGTAGTAAGCTCCTGGGGGAGGAGGTTCTGGAGGAACGCCTGGCCGCTGCAGTTCAGGCGTTTGGAAGTTCTTGTGTGCTGGAGATGTAGCTGGGGTTTGTCTCACAGTGGAG
Seq C2 exon
CCCGCCCTGAAGATGTTGGCACCAGCCTCTACTTTGTAAATGACTCCTTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103-1-7,2-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0767911=I-set=PU(11.7=47.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCTGTCAATACGCACA
R:
CTGGTGCCAACATCTTCAGGG
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains