HsaEX1000524 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr11:117801225-117814295:+
Coord C1 exon
chr11:117801225-117801343
Coord A exon
chr11:117803983-117804163
Coord C2 exon
chr11:117810188-117814295
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTTCCACGGTCTCTCTGCAGGGC
3' ss Score
12.14
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CCAGCTGTGTTACCTGTGACAAGTCACCTTGCCTTTCTGGACCTCAGTTTCTTCACCATTGAGGTGAAAGAGCTGGGCTGGAATGATCACCAAGATCCCTTCCTAGGACCAAACACAAG
Seq A exon
GGCAGCATCCCTCCTGTCACTGTGACTGGCCACCAGCATTGTGGACCGAGACCCTCCTCAAAGTCCAGGAGTTGCTACAAAACACTAGCAAGTCCTCCAGCCACTCTGAGCAGGAGAAATGTGCGGCCCAGAAATTCCACCTGCTGGAGGCCAAAGCCACGGCTCCTGGGGTGCCCCAGTG
Seq C2 exon
AGACAAAGGAGACACGTGGACCCAAAACTCCGTGGACCCAAACTCCGTGGACCCAAAACTCCGTGGACTCAAAACTCCAGCGCCCTCTGGGGGAGGGGCAAGTACCCCTCAACCCCTTCTCCTTCACCCTTAGTGGCAAGTCCCGCTTTTCTAGGGGGCAAGAACCCCCAATCCCTTATTTCCGCACCCCGACCTCTTATCTCTGTGTCCCAATCCCTTATTTCCGCACCCCGACCTCTTATCTCTGTGCCCCAATCCCTTATTTCCGTGCCCCAACCCTTTCTCTGCTTTTCTGGAGGGCAAGAAACCCCCACCCCCTTCTCCGTATCTCTACTCTTTTCTCTAGGCTTGCCTCCTTCACTATGGGCAAGCTTCCACCTTCCATTCCTCCTTCTTCTCCCTTAGCCTGTATCCTTAAGAACTTAAAACCTCTTCAACTCTCACCTGACCTAAAATCAAAGTGTCTTATTTTCTTCTGCAATGCCGCTTGACCCCAATAC
VastDB Features
Vast-tools module Information
Secondary ID
Hs.585546_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGCTGGAATGATCAC
R:
AGAGATAAGAGGTCGGGGTGC
Band lengths:
254-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains