HsaALTD1038563-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:HGNC:25000]
Coordinates
chr19:37586668-37594319:-
Coord C1 exon
chr19:37594220-37594319
Coord A exon
NA
Coord C2 exon
chr19:37586668-37586745
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
GGCTTCTTTTCCTTGTCCAGCAC
3' ss Score
7.47
Exon sequences
Seq C1 exon
CGCTTGGCCCCTCCCGGGCCGCAGTACTCCTCGTGTGACACGGACATCATTAAGCCAGCTGAGAATCGTGCGGTTACAGCTGCTGCAGTTTCTTTGCAGA
Seq A exon
NA
Seq C2 exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479-1-2,2-2,3-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACTCCTCGTGTGACAC
R:
TCTTCTCCTGGAGGTGTGCAA
Band lengths:
119-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains