HsaEX0073973 @ hg38
Exon Skipping
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:HGNC:25000]
Coordinates
chr19:37586668-37594772:-
Coord C1 exon
chr19:37594741-37594772
Coord A exon
chr19:37594087-37594319
Coord C2 exon
chr19:37586668-37586745
Length
233 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGTTAATGCTCCTAGCGC
3' ss Score
4.13
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
CTTGACGCACGGAGCTTGTCTGCGCCGGCCAG
Seq A exon
CGCTTGGCCCCTCCCGGGCCGCAGTACTCCTCGTGTGACACGGACATCATTAAGCCAGCTGAGAATCGTGCGGTTACAGCTGCTGCAGTTTCTTTGCAGAGTAAGAGGCTCTTTTTGAAGTTTCCCTGATGGTGAGGCTTTACCCCTGGAAGTGTCTTAGGAAGAAGACCACTGTTAAAGATGTCCTATTCTAGCTTGACAGCCCTGTGGGGAAGACTAATCCCTTTCTAGAG
Seq C2 exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development